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Environmental DNA metabarcoding results of fish prey DNA in common loon (Gavia immer) fecal and cloacal swab samples from the Whitefish Chain of Lakes, Crow Wing County, Minnesota

Dates

Publication Date
Start Date
2015-07-14
End Date
2016-09-29

Citation

Lor, Y., and Kenow, K.P., 2023, Environmental DNA metabarcoding results of fish prey DNA in common loon (Gavia immer) fecal and cloacal swab samples from the Whitefish Chain of Lakes, Crow Wing County, Minnesota: U.S. Geological Survey data release, https://doi.org/10.5066/P96EXO3V.

Summary

The dataset contains sequencing read counts of fish prey eDNA metabarcoding (using primers targeting the 16S rRNA mitochondrial gene) that were extracted from fecal and cloacal swab samples collected from common loons (Gavia immer) captured on the Whitefish Chain of Lakes, Crow Wing County, Minnesota during 2015-2106. Sample type (cloacal or fecal); loon identification, age, and sex; capture date and location; and prey detections for each sample are provided.

Contacts

Point of Contact :
Kevin P Kenow
Process Contact :
Kevin P Kenow, Yer Lor
Originator :
Yer Lor, Kevin P Kenow
Metadata Contact :
Kevin P Kenow
Publisher :
U.S. Geological Survey
Distributor :
U.S. Geological Survey - ScienceBase
SDC Data Owner :
Upper Midwest Environmental Sciences Center
USGS Mission Area :
Ecosystems

Attached Files

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LICENSE.txt 306 Bytes text/plain
loon_diet_metabarcoding_code.sh 7.54 KB application/x-sh
README.md 1.9 KB text/x-web-markdown
Whitefish Chain of Lakes_16S results.csv 19.88 KB text/csv
Whitefish Chain of Lakes_16S results_metadata.xml
Original FGDC Metadata

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53.41 KB application/fgdc+xml

Purpose

Common loon (Gavia immer) foraging patterns and the relative importance of cisco (Coregonus artedi) in the diets of breeding and non-breeding common loons were evaluated for a set of cold-water cisco refuge lakes in Minnesota. Because high-quality cisco lakes are relatively rare in Minnesota but seem to be correlated with large loon aggregations, the goals of this study were to evaluate common loon foraging patterns and the relative importance of cisco in the diets of breeding and non-breeding common loons on a select group of cold-water cisco refuge lakes in Minnesota. The objective was to assess diets of loons either associated with breeding territories or non-breeding aggregations using environmental DNA (eDNA) metabarcoding of prey DNA from loon fecal or cloacal swab samples to determine the contribution of cisco relative to all fish prey consumed.

Map

Communities

  • USGS Data Release Products
  • Upper Midwest Environmental Sciences Center (UMESC)

Tags

Provenance

Additional Information

Identifiers

Type Scheme Key
DOI https://www.sciencebase.gov/vocab/category/item/identifier doi:10.5066/P96EXO3V

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