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eDNA observations, concurrent with trawl survey, of marine fish in coastal New Jersey, USA 2019

Dates

Start Date
2019-01-11
End Date
2019-11-10

Summary

These data are amplicon sequence variant (ASV) counts of marine fish derived from environmental DNA (eDNA) sampling targeting the 12S rDNA, V5 region. DNA was extracted from filtered water samples taken off coastal New Jersey during the 2019 New Jersey Ocean Trawl Survey. Sampling corresponded to the New Jersey Ocean Trawl Survey efforts, but trawl data are not included here.

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Attached Files

Click on title to download individual files attached to this item.

Supplementary Table 11, Figures 1-8.docx
“Article Supplementary Material 1”
18.54 MB application/vnd.openxmlformats-officedocument.wordprocessingml.document
Supplementary Tables 1-6.xlsx
“Article Supplementary Material 2”
200.81 KB application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
Supplementary Tables 7-10.xlsx
“Article Supplementary Material 3”
345.34 KB application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
Supplementary Tables 12-16.xlsx
“Article Supplementary Material 4”
64.68 KB application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
process_events.R
“R script to process events”
18.41 KB text/x-rsrc
process_taxa.R
“R script to process taxa”
5.69 KB text/x-rsrc
Update_SB_from_EML.R
“R script to update ScienceBase”
2.53 KB text/x-rsrc
WorMS_to_DwC.R
“Align WoRMS output with DwC”
2.51 KB text/x-rsrc
write_EML_skeleton.R
“Generate EML draft for uploading to IPT”
15.92 KB text/x-rsrc
dwc_rockefeller_njtrawl_edna_assessment_dna_derived_2023-06-06.csv
“Darwin Core: DNA derived data”
16.21 MB text/csv
dwc_rockefeller_njtrawl_edna_assessment_occurrence_2023-06-06.csv
“Darwin Core: occurrence”
10.36 MB text/csv
process_data.R
“R script to process all data”
11.65 KB text/x-rsrc

Material Request Instructions

NA

Purpose

Evaluate performance of eDNA for monitoring marine fish populations by comparing bottom trawl catches to eDNA from concurrent water samples.

Map

Communities

  • Ocean Biodiversity Information System (OBIS) - USA Dataset Collection

Tags

Provenance

Data source
Input directly
Downloaded supplementary material from journal article and processed into Darwin Core in preparation for submission to the OBIS-USA IPT.

Additional Information

Alternate Titles

  • rockefeller_njtrawl_edna_assessment

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