Skip to main content
  1. ScienceBase Catalog
  2. Alaska Science Center (ASC)
  3. _Ecosystems
  4. Data for Genomic Characterization of Highly Pathogenic H5 Avian Influenza Viruses from Alaska in 2022

Data for Genomic Characterization of Highly Pathogenic H5 Avian Influenza Viruses from Alaska in 2022

Dates

Publication Date
Start Date
2022-04-26
End Date
2022-12-18

Citation

Scott, L.C., Ahlstrom, C.A., Torchetti, M.K., Lenoch, J.B., Beckmen, K.B., Boldenow, M., Buck, E.J., Daniels, B., Dilione, K.E., Gerlach, R., Lantz, K., Matz, A., Poulson, R.L., Sheffield, G., Sinnett, D., Stallknecht, D.E., Stimmelmayr, R., Taylor, E., Williams, A.R., Ramey, A.R., 2024, Data for genomic characterization of highly pathogenic H5 avian influenza viruses from Alaska in 2022: U.S. Geological Survey data release, https://doi.org/10.5066/P13RDHRQ.

Summary

This data set describes genomic sequence information from 2022 used to infer spatiotemporal trends pertaining to the introductions of highly pathogenic H5N1 avian influenza viruses into Alaska and spread among wild birds, backyard poultry, and mammals.

Contacts

Point of Contact :
Alaska Science Center
Originator :
Laura C Scott, Christina A Ahlstrom, Mia K. Torchetti, Julianna B. Lenoch, Kimberlee B. Beckmen, Megan Boldenow, Evan J. Buck, Daniels, Bryan, Krista E Dilione, Robert Gerlach, Kristina Lantz, Angela Matz, Rebecca L. Poulson, Gay Sheffield, David R. Sinnett, David E. Stallknecht, Raphaela Stimmelmayr, Eric Taylor, Alison Williams, Andy M Ramey
Metadata Contact :
Alaska Science Center
Publisher :
Alaska Science Center
Distributor :
USGS ScienceBase Team
SDC Data Owner :
Alaska Science Center
USGS Mission Area :
Ecosystems

Attached Files

Click on title to download individual files attached to this item.

HPAI_genotype_trend_metadata.xml
Original FGDC Metadata
View 		44.12 KB application/fgdc+xml
HPAI_genotype_alaska.csv 41.39 KB text/csv
HPAI_genotype_trend_metadata.html 97.46 KB text/html
HPAI_geotype_alaska_taxonomy.csv 3.35 KB text/csv

Purpose

Data were collected by the U.S. Department of Agriculture through the testing of animals for highly pathogenic avian influenza and analyzed at the U.S. Geological Survey Alaska Science Center. Data can be used for deriving epidemiological inference pertaining to the occurrence and spread of highly pathogenic H5N1 avian influenza among animals represented by the samples described herein.

Map

Map Preview

Communities

  • Alaska Science Center (ASC)

Tags

Provenance

Additional Information

Identifiers

Type Scheme Key
DOI https://www.sciencebase.gov/vocab/category/item/identifier doi:10.5066/P13RDHRQ

Item Actions

View Item as ...

JSON ATOM ISO XML

Save Item as ...

JSON FGDC MODS XML ISO XML

View Item...

Metrics