INTRODUCTION In 2001, the U.S. Geological Survey (USGS) began a water-quality study of the Yukon River. The Yukon River Basin (YRB), which encompasses 330,000 square miles in northwestern Canada and central Alaska (fig. 1), is one of the largest and most diverse ecosystems in North America. The Yukon River is more than 1,800 miles long and is one of the last great uncontrolled rivers in the world, and is essential to the eastern Bering Sea and Chukchi Sea ecosystems, providing freshwater runoff, sediments, and nutrients (Brabets and others, 2000). Despite its remoteness, recent studies (Hinzman and others, 2005; Walvoord and Striegl, 2007) indicate the YRB is changing. These changes likely are in response to a warming trend in air [...]