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This data set contains genetic information collected from eelgrass (Zostera marina) populations along the Pacific coast of North America from Alaska to Baha California. A total of 447 samples were collected comprising 401 unique individuals (genets) and 46 clones (ramets) from which 10 microsatellite DNA loci were obtained.
Categories: Data;
Types: Citation;
Tags: Alleles,
Angiosperms (Flowering Plants),
Aquatic Biology,
Aquatic ecosystems,
Bahia Magdelena,
The Cook County Bureau of Technology (BOT) identified a need for bathymetric and water-quality surveys of the surface water bodies within Cook County to inform management of surface-water and stormwater resources, aid emergency responders during search and rescue operations, inform construction permitting, and improve understanding of aquatic habitat. The U.S. Geological Survey (USGS) and the BOT worked closely together to designate specific water bodies to be surveyed. The size, accessibility, availability of existing data, and use of the water body were considered during selection. The objectives of this joint study between the USGS and the BOT are to collect, process, and analyze bathymetric and ancillary water-quality...
This dataset provides cycle threshold (Ct) values achieved during qPCR for 6 sex-linked genes, and two autosomal genes, for individuals from 60 species and across 13 orders of birds.
This dataset provides shapefiles and tabular data representing river channel geometries measured on photogrammetric imagery and extracted from a photogrammetric digital elevation model (acquired August 2021) along the Totatlanika River in central Alaska. This is a child item of the USGS Data Release: https://doi.org/10.5066/F7X63KF2
Categories: Data;
Tags: Alaska,
Alaska Range,
Buzzard Creek,
California Creek,
GeoScientificInformation,
This data release contains information on the seasonal diversity and abundance of arthropods collected at the Colville River Delta, Alaska, 2011-2012 and 2014-2107. Researchers with the US Geological Survey began studying the reproductive ecology of birds at a site on the Colville River near the Beaufort Sea coast in 2011. Researchers concurrently collected arthropods at 3-day intervals to understand the relationship between the seasonal abundance of arthropods and the reproductive output of insectivorous birds.
This data set is comprised of one table with sampling information and NCBI BioProject accession numbers for sequence information of this amplicon-based study targeting Labyrinthula, Phytophthora, and Halophytophthora of known pathogenic and non-pathogenic [to eelgrass (Zostera marina)] strains from eDNA samples. eDNA samples included water, sediment, and eelgrass from Notsuke Wan (Cove) Japan, Safety Sound, Izembek Lagoon, Port Moller, Chignik Lagoon, and Frederick Sound, Alaska and cloacal swabs from waterfowl hunted near Cold Bay Alaska. Replicate samples and multiple sampling dates of the same location were included. Highly conserved primers which could differentiate species of interest were developed for four...
Categories: Data,
Data Release - Revised;
Tags: Alaska,
Animals/Vertebrates,
Aquatic Biology,
Aquatic ecosystems,
Biological informatics,
This is a child item of the USGS Data Release: https://doi.org/10.5066/F7513WCB. These data are part of the Gulf Watch Alaska (GWA) long-term monitoring program, nearshore monitoring component. The dataset has three comma separated values (.csv) file exported from a Microsoft Access relational database. The data consist of 1) counts of Nucella spp., Lottia spp., Lirabuccinum dirum, and Katharina tunicata, 2) a taxonomic classification table, and 3) a table of Gulf Watch Alaska contributors. Version History: First release: September 2022 Revised: October 2023 (ver. 2.0)
Categories: Data;
Tags: Alaska,
Alaska Peninsula,
Animals/Invertebrates,
Aquatic biology,
Aquatic ecosystems,
This data package contains 362 digital photos of a walrus haulout location at Cape Greig, on the Alaska Peninsula summer 2023 (2023-05-09 23:01:08 UTC through 2023-11-16 21:01:14 UTC). Photos were taken up to three times daily from a remotely operated camera located on a bluff above the haulout. The camera station was installed in the early spring 2023, prior to arrival of walruses at the site. Images are transferred via satellite link. Version History: First release: June 2023 Revised: January 2024 (ver. 2.0)
These data are comprised of two tables, one table containing wolverine (Gulo gulo) sample and genetic information for 20 microsatellite loci (Gg10-1, Gg25, Gg37-2, Gg42-1, Gg192-1, Gg443, Gg452, Gg454, Gg465, Gg471, Gg473, Gg-3-1, Gg-4, Gg-7-1, Ggu_216-1, Lut604, Ma-3-1, Mvis075, Tt-1, and Tt-4) and genetic sex determination results from North America and one Russian wolverine. All samples were obtained from collections at the University of Alaska Museum of the North or the University of New Mexico’s Museum of Southwestern Biology. The second table provides complete primer information for the genetic markers since several were redesigned from their originally-published sequences for this study.
This dataset provides clam species abundance and size data from intertidal and subtidal mixed sediment habitats in Glacier Bay National Park and Preserve (GBNPP). Data are provided for all observed clams, horse mussels, or urchins 14 mm or larger. Sampling involved excavating 25 cm of substrate from quadrats (approximately 0.25 sq meter) along transects at random and selected sites, 10 quadrats at the 0 Mean Lower Low Water (MLLW) tide level for intertidal sampling and 20 quadrats at approximately 9 m depth for subtidal sampling. Site and taxonomic information are provided. Abundance and size data are provided in two tables with different data configurations: (1) a compact version with data for those species observed...
Categories: Data,
Data Release - Revised;
Tags: Alaska,
Animal and plant census,
Aquatic Biology,
Aquatic biology,
Benthic habitat,
This dataset contains sampling information and genetic data of 12 novel microsatellite loci developed and polymorphic in the Sea Sandwort (Honckenya peploides) and screened in Merckia (Wilhelmsia physodes) from Alaska. The allele sizes for the 12 microsatellite loci developed in this study are included for two populations of Sea Sandwort (Fossil Beach, Kodiak and Egg Bay, Atka) and one population of Merckia (upper Coleen River, Brooks Range).
Categories: Data;
Tags: Alaska,
Aleutian Islands,
Angiosperms (Flowering Plants),
Biogeography,
Biota,
This data set provides sample information, microsatellite genotype, and NCBI accession numbers for mitochondrial DNA sequences of peregrine falcons (Falco peregrinus) from North America and Russia. Version History: First release: January 2020 Revised: June 2022 (ver. 2.0)
This dataset consists of fossil diatom counts from sediment cores collected in coastal environments on Montague Island, Alaska, and analyzed at Virginia Tech University.
The USDA Forest Service (USFS) builds two versions of percent tree canopy cover (TCC) data to serve needs of multiple user communities. These datasets encompass the conterminous United States (CONUS), Coastal Alaska, Hawaii, and Puerto Rico and U.S. Virgin Islands (PRUSVI). The two versions of data within the v2021-4 TCC product suite include: - The raw model outputs referred to as the annual Science data; and - A modified version built for the National Land Cover Database referred to as NLCD data. They are available at the following locations: Science: https://data.fs.usda.gov/geodata/rastergateway/treecanopycover/ https://apps.fs.usda.gov/fsgisx01/rest/services/RDW_LandscapeAndWildlife NLCD: https://www.mrlc.gov/data...
Conservation of imperiled species is frequently challenged by insufficient knowledge of life history and the environmental factors that affect various life stages. The larvae (glochidia) of most freshwater mussels in the family Unionidae are obligate ectoparasites of fishes. We describe the early life history of the federally endangered Southern Kidneyshell, Ptychobranchus jonesi, and compare methods for estimating fecundity and conducting host trials on conglutinate-producing mussel species. Both the glochidial inoculation baths and direct feeding of conglutinates to Percina nigrofasciata, Etheostoma edwini, and Etheostoma fusiforme resulted in successful metamorphosis to the juvenile life stage. Ptychobranchus...
Categories: Data;
Types: Citation;
Tags: Pea River, Coffee County, Alabama,
USGS Science Data Catalog (SDC),
biogeography,
endangered species,
population and community ecology
This data package includes 40 geospatial rasters (maps) depicting various metrics about eelgrass (Zostera marina) coverage at Izembek Lagoon, Alaska, during 2016 and 2020. Two maps were produced from two Sentinel-2 satellite images collected on July 1, 2016, and August 14, 2020. Spectral classes derived from each satellite image were annotated and mapped based on data collected in the field at plots within each spectral class.
Categories: Data;
Tags: Alaska,
Alaska Peninsula,
Angiosperms (flowering plants),
Animal and plant census,
Biological productivity,
This dataset is one table with results of tests to determine exposure of Chukchi Sea polar bears to a suite of pathogens. Results are serological tests for antibodies and tests of fecal samples for presence of parasites. Serologic assays were conducted for Toxoplasma gondii, Neospora caninum, Francisella tularensis, Coxiella burnetii, Leptospira spp., Brucella canis, Brucella abortus/suis, and canine distemper virus. Parasitology analyses were conducted for presence of Giardia cysts and Cryptospiridium oocysts in fecal samples. Polar bears were sampled on sea ice in the Chukchi Sea between mid-March and early May 1987-1994 and 2008-2017. The dataset includes relevant information about the bears that were captured...
This data package contains location data collected by the Argos System (CLS America, Inc.) from satellite transmitters attached to 116 Lesser Yellowlegs captured at multiple sites across their breeding and nonbreeding range in North America, 2018-2021. The raw data were processed to accomplish two goals: 1) flag implausible location and 2) remove locations within Joint Base Elmendorf-Richardson (JBER) and Eielson Air Force Base boundaries. Removal of locations in military land boundaries is required due to federal guidelines by Department of Defense (DoD) Public Affairs office and DoD Partners in Flight. Due to data sharing constraints of participating agencies, not all the locations (i.e., latitude and longitude)...
This dataset is one table with data collected and derived from polar bears sampled in Alaska's southern Beaufort Sea during 1983-2018. Collected data includes demographic and morphometric information. Derived data includes blood-based analyte values determined from whole blood and serum samples. Serum samples were analyzed on an Abaxis VS2 Biochemistry Analyzer and whole blood samples were analyzed on an Abaxis HM5 Diagnostic Analyzer. VS2 analysis quantified values of 13 biochemistry analytes for the period 1983-2016. Complete blood count (CBC) analyte values were quantified from the HM5 analysis for the period 2005-2018. These data were used to (i) generate reference ranges of serum biochemistry analyte values...
These data are in three folders of Keyhole Markup Language (KML) geospatial polygons representing the outlines of walrus herds apparent in satellite imagery. Each KML file contains one or more geospatial polygons of walrus herd outlines created by one observer who visually interpreted the images. The attribute values from all KML files are collected in a CSV table included with this data package. Additional walrus satellite image-derived Chukchi Sea walrus haulout outlines are available in another USGS data release (Fischbach and Douglas 2022; https://doi.org/10.5066/P9CSM0KN)
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