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This data release contains bioassay data from sediment toxicity tests conducted by the USGS Columbia Environmental Research Center (CERC) with 66 sediment samples collected from in and around the Upper Columbia River in the fall of 2013. Toxicity testing was conducted from fall 2013 through summer 2014 with the amphipod, Hyalella azteca, the midge Chironomus dilutus, and the mussel Lampsilis siliquoidea. Short-term toxicity endpoints (10-28 d) included survival, weight, and biomass of all test organisms. Long-term tests with amphipods (42 d) and midges (about 50 d) included reproduction endpoint. These data are intended to be used to characterize concentration-response relationships between metals concentrations...
Interest in the field of environmental DNA (eDNA) is growing rapidly and eDNA surveys are becoming an important consideration for aquatic resource managers dealing with invasive species. However, in order for eDNA monitoring to mature as a research and management tool, there are several critical knowledge gaps that must be filled. One such gap is the fate of eDNA materials in the aquatic environment. Understanding the environmental factors that influence the decay of eDNA and how these factors impact detection probabilities over time and space could have significant implications for eDNA survey design and data interpretation. Here we experimentally explore eDNA decay in waste materials and reproductive cells obtained...
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Semi-Permeable Membrane Devices (SPMDs) were deployed for approximately 2 weeks at Palmyra Atoll during October and November, 2008. SPMDs passively accumulate organic compounds from the aquatic enviroment, and are then analyzed for various organic compounds. The deployment date, reasons for selecting the particular site, and photograph numbers as links are indicated.
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Following an explosion at the Deepwater Horizon drilling rig on April 20, 2010, MC252 an estimated 3.19 million barrels of oil leaked into the Northern Gulf of Mexico over 87 days. The endangered Kemp's ridley sea turtle (Lepidochelys kempii [Lk]) has a long established record of using the area near the well as primary foraging grounds. Resulting short- and long-term negative impacts of the oil spill on sea turtles could induce changes in the health and fitness of the Lk population. MC252 oil is known to have entered the foraging areas. Consequently, stable carbon and nitrogen isotope signatures from MC252 oil should be reflected in the food web and in the tissues of organisms such as sea turtles. We measured carbon...
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Data set contains depth and velocity grids centerpoints generated from hydrodynamic model (SRH-2D) simulations run for a range of discharges. Date range corresponds to month(s) that bathymetric survey was performed. Three study reaches were considered in this analysis: the Fairview reach of the Yellowstone River, MT, the Miami and Lisbon-Jameson reaches of the Lower Missouir River. Data and application are described in detail in accompanying journal article (Erwin et al., 2017).
Data were collected in June 2016 as part of a dye-trace experiment in the Missouri River downstream from Fort Peck Dam, Montana, USA. Fluorometers were deployed at 8 measurement stations over a 135-km study reach. Approximately 51 L of Rhodamine WT (RWT) dye was injected on 26 June 2016 at 14:30 MDT. The injection occured along a transect located approximately 3000 meters downstream from the confluence of the Milk and Missouri Rivers. Injection was performed via a gravity-feed system and was complete within seven minutes of initaition. RWT dye was diluted by at least half to facilitate mixing and was injected approximately 0.30 m below the water surface. Fluorometers were placed approximately 4 to 8 m from shore...
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Shapefile created by USGS. Channel transects were constructed to be used in evaluating channel widths and channel width variation. Transects were laid out at 0.1 mile intervals along the navigation channel thalweg. They extend perpendicular to thalweg and intersect the bankfull channel margin, delineated from low-altitude aerial orthophotos provided by the US Army Corps of Engineers, 11/1/2012 to 11/21/2012. The bankfull dimensions were digitized by hand. Each transect was additionally attributed with the USGS bend number, Pallid Sturgeon Population Assessment Program (PSPAP) segment number, and PSPAP bend number.
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Data set contains individual structures and use-areas identifiable from scanned images of 1944 hand-drawn map of buildings and facilities at Palmyra Atoll during World War II, at which time the atoll served as a training facility for the U.S. Navy. Scanned images were georeferenced against control points identifiable from 2007 QuickBird satellite imagery and on control points for which positional data were gathered during sampling in October and November 2008. Georeferenced image was then used to delineate individual structures and other areas as polygons. Attributes were taken from legend for 1944 map.
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Data set contains depth and velocity grids centerpoints generated from hydrodynamic model (SRH-2D) simulations run for a range of discharges. Date range corresponds to month(s) that bathymetric survey was performed. Three study reaches were considered in this analysis: the Fairview reach of the Yellowstone River, MT, the Miami and Lisbon-Jameson reaches of the Lower Missouir River. Data and application are described in detail in accompanying journal article (Erwin et al., 2017).
Poor survival, growth and reproduction of the amphipod Hyalella azteca has been observed in exposures using reconstituted waters. Previous studies have reported success in H. azteca water-only exposures with the addition of relatively high concentrations of bromide (Br). This study evaluated the influence of lower environmentally representative concentrations of Br on the response of the amphipod H. azteca in 42-d water-only exposure conditions in various reconstituted waters. Improved performance of H. azteca was observed in reconstituted waters with >0.02 mg Br/L. These tables and figures provide online supplemental information that will not be included in the journal article.
The vernal pool fairy shrimp, Branchinecta lynchi, (Branchiopoda; Anostraca) and other fairy shrimp species have been listed as ‘threatened’ or ‘endangered’ under the United States’ Endangered Species Act (ESA). There is little information about the sensitivity of Branchinecta spp. to toxic effects of contaminants, making it difficult to determine whether they are adequately protected by water quality criteria. A series of acute (24 hr) lethality/immobilization tests were conducted with three species of fairy shrimp (Branchinecta lynchi, Branchinecta lindahli, and Thamnocephalus platyurus) and 10 chemicals with varying modes of toxic action: ammonia, potassium, chloride, sulfate, chromium(VI), copper, nickel, zinc,...
The risks to wildlife and humans from uranium (U) mining to the Grand Canyon watershed are largely unknown. In addition to U, other co-occurring ore constituents contribute to risks to biological receptors depending on their toxicological profiles. This data was collected to characterize the pre-mining concentrations of total arsenic (As), cadmium (Cd), copper (Cu), lead (Pb), mercury (Hg), nickel (Ni), selenium (Se), thallium (Tl), U, and zinc (Zn); radiation levels; and histopathologies in biota (vegetation, invertebrates, amphibians, birds, and mammals) at the Canyon Mine.
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Between the years 2000 and 2016, scientists and technicians from the U.S. Geological Survey (USGS) Columbia Environmental Research Center (CERC) have collected over 400 field-days worth of acoustic Doppler current profiler (ADCP) measurements on the Missouri and Yellowstone Rivers, primarily for the purposes of assessing physical aquatic habitat for the pallid sturgeon. Scientists and technicians collected data using boat-mounted Teledyne Rio Grande ADCPs, which were processed using customized scripting tools and archived in standardized formats. To assess longitudinal variability in depth and velocity distributions along the Missouri River, as well as compare the Missouri River to its unaltered analog, the Yellowstone...
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This data was generated from a study in which five experiments were conducted that tested whether and how dissolved chemicals might assist food recognition in two filter-feeding fishes, the silver (Hypophthalmichthys molitrix) and the bighead carp (H. nobilis). The buccal-pharngeal pumping (BPP), a behavior in which fish pump water into their buccal cavities, was observed in both silver and bighead carps after exposure to a a variety of food filtrates and mixtures. In addition, occlusion experiments to determine if the olfactory sense has a very important, but not exclusive, role in bigheaded carp feeding behaviors were conducted.
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Shapefile created by USGS. This is a polygon created from Landsat TM imagery. All Landsat 4-5 TM images overlapping the Missouri River downstream from Gavins Point Dam were identified and examined for lack of clouds. Usable images were classified into sand, vegetation, and water. Classified images were then merged, and the number of times a given pixel was classified as either sand, vegetation, or water were computed. The presented dataset represents pixels which were classified as sand in greater than 5% of images which were collected during a growing season defined as julian day 116-296 (to preclude vegetated islands, which classify as sand outside of foliation), translated into polygons.
The risks to wildlife and humans from uranium (U) mining to the Grand Canyon watershed are largely unknown. In addition to U, other co-occurring ore constituents contribute to risks to biological receptors depending on their toxicological profiles. This data was collected to characterize the pre-mining concentrations of total arsenic (As), cadmium (Cd), copper (Cu), lead (Pb), mercury (Hg), nickel (Ni), selenium (Se), thallium (Tl), U, and zinc (Zn); radiation levels; and histopathologies in biota (vegetation, invertebrates, amphibians, birds, and mammals) at the Canyon Mine.
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This dataset includes microsomal EROD data from an assay done with liver samples from several fish species that are found in Arizona at sites that are being assessed for PBDE contamination. The data was created in September and October 2016.
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Soils and organismal tissue from known and potential sources of contamination at Palmyra Atoll were measured for concentrations of 13 elements using a hand-held X-Ray Flourometer (XRF). Measured elements include; Lead (PB), Arsenic (As), Cobalt (Co), Cromium (Cr), Copper (Cu), Antimony (Sb), Iron (Fe), Titanium (Ti), Zinc (Zn), Nickel (Ni), Manganese (Mn), Sulphur (S) and Phosphorous (P). Concentrations of other elements were excluded because they were below the limit of detection or were sporadically detected; these include Tin (Sn), Cadmium (Cd), Silver (Ag), Strontium (Sr), Ruthenium (Rb), Selenium (Se), Mercury (Hg), Vanadium (V), Scantium (Sc), Calcium (Ca), Potassium (K), and Chlorine (Cl). Attributes for...
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The data release includes the data collected from multiple acute 96-hour toxicity tests with up to 20 chemicals and five mussel species in water exposures.
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Sandbars of large sand-bedded rivers of the Central U.S. serve important ecological functions to many species, including the endangered Interior Least Tern (Sternula antillarum) (ILT). ILT are colonial birds which feed on fish and nest primarily on riverine sandbars during their annual breeding season of approximately May through July, depending on region. During this time, ILT require bare sand of sufficient elevation so as not to be inundated during the period between nest initiation and fledging of hatchlings. ILT were originally listed as endangered due in part to decreases in available sandbar habitat from river channelization and impoundment. Sandbars in Central U.S. rivers used by ILT are highly dynamic,...
map background search result map search result map Acoustic Doppler current profiler raw measurements on the Missouri and Yellowstone rivers, 2000-2016, Columbia Environmental Research Center Microsomal EROD data of fish liver sample assay from species collected in the Salt and Gila Rivers, Arizona Lisbon-Jameson Reach of Lower Missouri River hydrodynamic model outputs Miami Reach of Lower Missouri River Hydrodynamic Model Outputs Acute sensitivity of a broad range of freshwater mussels to chemicals with different modes of toxic action-data Kemp's ridley sea turtle forage location centroids in the northern Gulf of Mexico, 2010, 2011 and 2012 Sediment bioassay toxicity data from the Upper Columbia River, Washington, 2013-2014 US Navy roads Palmyra Atoll 1944 XRF samples Palmyra Atoll 2008 and 2010 SPMD samples Palmyra Atoll 2008 Chemical cues which include amino acids mediate species-specific feeding behavior in invasive filter-feeding bigheaded carps-Data Interior least tern sandbar nesting habitat measurements from Landsat TM imagery Bankfull channel transects, Lower Missouri River Persistent sand polygons, Lower Missouri River US Navy roads Palmyra Atoll 1944 SPMD samples Palmyra Atoll 2008 XRF samples Palmyra Atoll 2008 and 2010 Miami Reach of Lower Missouri River Hydrodynamic Model Outputs Lisbon-Jameson Reach of Lower Missouri River hydrodynamic model outputs Acute sensitivity of a broad range of freshwater mussels to chemicals with different modes of toxic action-data Sediment bioassay toxicity data from the Upper Columbia River, Washington, 2013-2014 Kemp's ridley sea turtle forage location centroids in the northern Gulf of Mexico, 2010, 2011 and 2012 Persistent sand polygons, Lower Missouri River Bankfull channel transects, Lower Missouri River Acoustic Doppler current profiler raw measurements on the Missouri and Yellowstone rivers, 2000-2016, Columbia Environmental Research Center Interior least tern sandbar nesting habitat measurements from Landsat TM imagery