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The data set contains the results of experimental challenge of captive zebra finches with an American crow isolate of West Nile virus (WNV). Data include infectivity, mortality, viremia, oral shedding of virus, and serology for anti- WNV antibodies. Australian and Timor zebra finches were used in this study and both are useful as a laboratory model of an avian species with moderate susceptibility to WNV.
Categories: Data;
Types: Citation;
Tags: National Wildlife Health Center,
USGS Science Data Catalog (SDC),
West Nile virus,
immunoassay,
qRT-PCR,
These plant and soil data were collected by Timothy M. Wertin and Sasha C. Reed in the spring, summer, and fall of 2011 at a climate manipulation experiment site near Moab, UT (38.521411, -109.470567). These data were collected to assess how warming affects leaf photosynthesis, soil CO 2 efflux, and soil chemistry in plots of ambient and warming treatments.
This ESRI geodatabase consists of 5 feature datsets with 23 individual polygon feature classes and two raster datasets. A master campsite polygon feature class represents the boundaries of campsites identified in the 1973, 1984, and 1991 campsite inventories of the Colorado River corridor in Grand Canyon, Arizona. The other polygon feature classes represent camp locations along the Colorado River corridor in Grand Canyon, Arizona during different survey periods using different surveying techniques. The raster datasets represent sub-aerial and sub-surface sandbar surfaces at 37 long term-monitoring sites between Lees Ferry and Diamond Creek, Arizona in Grand Canyon National Park, measured in September and October...
The data are population sizes of yeast Saccharaomyces cerevisiae growth in laboratory cultures over a period of several days with different levels of growth inhibitor cycloheximide.
Categories: Data;
Types: Citation;
Tags: Laboratory,
USGS Science Data Catalog (SDC),
carrying capacity,
growth rate,
heterogeneous resource distribution,
This dataset provides supporting information for the species distribution data used in the associated manuscript. Collections of five non-native fish species were made by a number of institutions, and several capture techniques were used. This dataset also includes number of individuals of each species captured at each locality.
Categories: Data;
Types: Citation;
Tags: Alafia River,
Aquatic Biology,
Florida,
Hillsborough River,
Little Manatee River,
This data set is associated with an administrative report submitted to the U.S. Food and Drug Administration Center for Veterinary Medicine (CVM). The project goal was to determine the effects of hydrogen peroxide on the microflora of recirculating aquaculture systems (RAS). There are few aquaculture drugs approved for use in RAS and the CVM will evaluate findings from the study to determine if hydrogen peroxide would be safe to use in RAS.
This data set consists of monthly averages of soil and litter properties. Rows are grouped in the following order: year, month, vegetation type, plot ID. Within a single month five plots were sampled within each of the 2 vegetation types (10 plots total). Columns F+ represent individual measurements.
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Mississippi River,
Nitrogen cycling,
Pool 8,
USGS Science Data Catalog (SDC),
Upper Mississippi River,
Increased nutrient and sediment loading have caused observable changes in algal community composition, and thereby, altered the quality and quantity of food resources available to native freshwater mussels. Our objective was to characterize the relationship between nutrient conditions and mussel food quality and examine the effects on the fatty acid composition, growth and survival of juvenile mussels. Juvenile Lampsilis cardium and L. siliquoidea were deployed in cages for 28 d at four riverine and four lacustrine sites in the lower St. Croix River, Minnesota/Wisconsin, USA. Mussel foot tissue and food resources (four seston fractions and surficial sediment) were analyzed for quantitative fatty acid (FA) composition....
Categories: Data;
Types: Citation;
Tags: Mississippi River,
Prescott, WI,
St Croix Falls, WI,
St Croix River,
St Croix River,
Determine the oxytetracycline hydrochloride concentrations in water samples provided by the Bozeman Fish Technology Center taken during Pennox 343 efficacy studies.
To help determine whether Hg had a causal effect on corticosterone, we investigated the impact of experimental Hg intake on the corticosterone stress response in captive juvenile loons. Juveniles were subjected to three different feeding regimes: 0, 0.4 and 1.2 µg Hg (as MeHgCL)/g wet weight (ww) fish. We then measured baseline and 30 min post-solitary confinement stressor corticosterone concentrations. The data set consists of times of blood draws and dietary Hg levels. Blood samples and data set were provided to the senior author for analysis.
Categories: Data;
Types: Citation;
Tags: Corticosterone,
Loon,
Piscivorous bird,
Stress,
USGS Science Data Catalog (SDC),
Aerial imagery for the Upper Mississippi River System (UMRS) Navigational Pool 5 drawdown follow-up was collected in true color (TC) in August of 2015 at 6”/pixel using a mapping-grade Applanix DSS 439 digital aerial camera. All TC aerial images were orthorectified, mosaicked, and compressed into a JPEG2000-format image. The TC aerial images were interpreted and automated using a genus-level 150-class Long Term Resource Monitoring (LTRM) vegetation classification. The 2015 vegetation database was prepared by or under the supervision of competent and trained professional staff using documented standard operated procedures.
Categories: Data;
Types: Citation,
Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Aerial imagery,
Aquatic vegetation,
Floodplain,
Image interpretation,
Land cover/land use,
Carbon dioxide (CO2) is under consideration as a chemical fish deterrent at pinch points in rivers (e.g., inside locks) to reduce unwanted fish passage. This study evaluated the behavioral responses of invasive round goby (Neogobius melanostomus) to dissolved CO2 in laboratory tanks. The goal of this project was to quantify CO2 concentrations that modify round goby behavior. More specifically, avoidance behavior (voluntary response) and loss of equilibrium (involuntary response) were quantified across 5, 15, and 25°C water temperatures. These data can be used to inform future field testing of CO2 as an invasive fish deterrent. Spreadsheets include data that were used to evaluate the efficacy of carbon dioxide (CO2)...
Categories: Data;
Types: Citation;
Tags: Round goby,
USGS Science Data Catalog (SDC),
Upper Midwest Environmental Sciences Center,
avoidance,
behavior,
The table provides all fish collected using two different electrofishing methods at Illinois River sites in 2012 and 2013. Length and weights were taken on most species and gender was taken from Silver Carp. Fishes were categorized whether they were netters (caught by nets) or jumpers (jumped in the boat while sampling) and only netters were used in analyses. Large numbers of shad were collected in 2013 and an additional spreadsheet includes abundance data in an aggregated form for those sites. The data is not sensitive/classified and there are no legal restrictions on who may obtain or use the data.
Categories: Data;
Types: Citation;
Tags: Fishes,
Fishing with Benthic Mobile Gear,
Illinois,
Illinois River,
Native fish community,
Invasive species may vary in their seasonal distribution and abundance due to environmental conditions such as precipitation and temperature. Bigheaded carps, which include silver and bighead carp, are one such taxon of invasive species that appear to change habitats seasonally. Seasonal changes in bigheaded carp distribution may occur because of hydrological changes, water temperature changes, and spawning activities. Monitoring this seasonal dispersal and migration is important for management to control the population size and spread of the species. We examined if environmental DNA (eDNA) approaches could detect seasonal changes in the occurrence of DNA in water samples and used these approaches to calculate the...
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Americus,
French Post,
Indiana,
Mascouten,
Occupancy modeling,
Interest in the field of environmental DNA (eDNA) is growing rapidly and eDNA surveys are becoming an important consideration for aquatic resource managers dealing with invasive species. However, in order for eDNA monitoring to mature as a research and management tool, there are several critical knowledge gaps that must be filled. One such gap is the fate of eDNA materials in the aquatic environment. Understanding the environmental factors that influence the decay of eDNA and how these factors impact detection probabilities over time and space could have significant implications for eDNA survey design and data interpretation. Here we experimentally explore eDNA decay in waste materials and reproductive cells obtained...
Categories: Data;
Types: Citation;
Tags: Aquatic Biology,
Ecology,
Environmental Health,
Genetics,
Missouri,
The dataset describes rangeland monitoring results from the Hanksville, UT (USA) area. Monitoring results consist of canopy cover of plant species and functional types according to ecological site group from 1967 to 2013. The study area is bordered on the north by the Wayne-Emery County line, on the west by Capitol Reef National Park, and on the south and east by the Colorado River, Glen Canyon National Recreation Area, and Canyonlands National Park. Cover was estimated every 1 to 5 years (except the last measurement that had a 12 year interval) from 1967 to 2013 at 36 permanently marked sites in 15 livestock grazing allotments/pastures. Canopy cover of perennial plant species was estimated to the nearest tenth...
Types: Citation;
Tags: Climate change,
Colorado Plateau,
Ecological sites,
Garfield County,
Grazing,
Intracoelomic implantation of electronic tags has become a common method in fishery research, but rarely are fish examined by scientists after release to understand the extent that surgical incisions have healed. Walleye (Sander vitreus) are a valuable, highly-exploited fishery resource in the Laurentian Great Lakes. Here, fishery capture of walleye with internal acoustic transmitters combined with a high reward program provided multiple opportunities to examine photographs and quantify the status of surgical incisions. Walleye (n=926) from reef and river spawning populations in Lake Erie and Lake Huron were implanted with acoustic transmitters during spring spawning events from 2011 to 2016. Incisions were closed...
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Detroit,
Lake Huron,
Lower Maumee,
Plant and animal tagging,
Sandusky,
These data consist of species relative cover, percent cover of dead plant material, percent cover of soil and rock, and a variety of broad - and local- scale environmental variables. These data relate to sample sites along the Colorado River through Grand Canyon between Lees Ferry and river mile 245. The plant and ground cover data included here were originally collected as a part of annual vegetation monitoring by Grand Canyon Monitoring and Research Center. Environmental variables were either recorded in the field or obtained through other data sources. Species and ground cover data were collected in August and September 2014 at 96 randomly selected sample sites that were approximately evenly distributed along...
Types: Citation;
Tags: American Southwest,
Arizona,
Colorado River,
Environmental variables,
Grand Canyon,
Observations and subtle shifts of vegetation communities in western Lake Erie have USGS researchers concerned about the potential for Grass Carp to alter these vegetation communities. Broad-scale surveys of vegetation using remote sensing and GIS mapping, coupled with on-the-ground samples in key locations will permit assessment of the effect Grass Carp may have already had on aquatic vegetation communities and establish baseline conditions for assessing future effects. Existing aerial imagery was used with object-based image analysis to detect and map aquatic vegetation in the western basin of Lake Erie.
Categories: Data;
Types: Citation,
Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Asian Carp,
Emergent Vegetation,
Erie County,
Grass Carp,
Great Lakes,
The point data file ("Soda Fire Point and Pasture Data (2016).Point Data.csv") includes 2016 vegetative cover values of exotic annual grass and perennial grass measured within three different types of plots for 75 pastures in the Soda Fire, which burned in 2015: 6m² plot using a grid-point intercept photo software, SamplePoint (Booth et al. 2006), 1m² quadrat using an unguided rapid ocular estimate in the field, 531m² circular plot using an unguided rapid ocular estimate in the field. Smaller plots were nested within larger plots. The pasture data file ("Soda Fire Point and Pasture Data (2016).Pasture Data.csv") includes pasture level metrics of area, elevation, precipitation, slope, heatload, soils, and herbicide...
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