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The data set includes delineation of sampling strata for the six study reaches of the UMRR Program’s LTRM element. Separate strata coverages exist for each of the three monitoring components (fish, vegetation, and water quality) to meet the differing sampling needs among components. Generally, the sampling strata consist of main channel, side channel, backwater, and impounded areas. The fish component further delineates a “shoreline” portion of the strata to be used for sampling gears deployed only along the shoreline. The data are raster in origin, with the center of each pixel representing the sampling location. Cell size is typically 50 meters, although several water quality strata are at 200 meter cell size.
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This data set consists of monthly averages of soil and litter properties. Rows are grouped in the following order: year, month, vegetation type, plot ID. Within a single month five plots were sampled within each of the 2 vegetation types (10 plots total). Columns F+ represent individual measurements.
This dataset includes quantifications of bigheaded carp DNA found in water samples collected from the Wabash River along transects at 3 sites over time. The samples were collected at 18 equidistant points in a transect across the river at each site. Samples were collected in 2013 on May 29, 30, 31, June 5, 6, 7, 8, 9, 10, 11, 16, 17, 19, 20, 21, and 22. Quantitative polymerase chain reaction (qPCR) was performed to determine the DNA concentrations in two replicates using the bigheaded carp assay defined in Merkes and others 2014.
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Invasive species may vary in their seasonal distribution and abundance due to environmental conditions such as precipitation and temperature. Bigheaded carps, which include silver and bighead carp, are one such taxon of invasive species that appear to change habitats seasonally. Seasonal changes in bigheaded carp distribution may occur because of hydrological changes, water temperature changes, and spawning activities. Monitoring this seasonal dispersal and migration is important for management to control the population size and spread of the species. We examined if environmental DNA (eDNA) approaches could detect seasonal changes in the occurrence of DNA in water samples and used these approaches to calculate the...
The U.S. Army Corps of Engineers' Upper Mississippi River Restoration (UMRR) Program Long Term Resource Monitoring (LTRM) element has overseen the collection, processing, and serving of bathymetric data since 1989. A systemic data collection for the Upper Mississippi River System (UMRS) was completed in 2010. Water depth in aquatic systems is important for describing the physical characteristics of a river. Bathymetric maps are used for conducting spatial inventories of the aquatic habitat and detecting bed and elevation changes due to sedimentation. Bathymetric data is widely used, specifically for studies of water level management alternatives, modeling navigation impacts and hydraulic conditions, and environmental...
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The data set includes delineation of sampling strata for the six study reaches of the UMRR Program’s LTRM element. Separate strata coverages exist for each of the three monitoring components (fish, vegetation, and water quality) to meet the differing sampling needs among components. Generally, the sampling strata consist of main channel, side channel, backwater, and impounded areas. The fish component further delineates a “shoreline” portion of the strata to be used for sampling gears deployed only along the shoreline. The data are raster in origin, with the center of each pixel representing the sampling location. Cell size is typically 50 meters, although several water quality strata are at 200 meter cell size.
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We sampled vegetation and breeding birds in Upper Mississippi River floodplain forest edge and interior areas to (1) measure Phalaris cover and (2) evaluate if the breeding bird assemblage responded to differences in Phalaris cover or other forest structure variables. Data are counts of birds collected during 3 surveys within 50m at each site using 10 minute point count methods. Vegetation was sampled using a releve technique at the bird count point within 10m of the point.
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Invasion of North American waters by Dreissena polymorpha and D. rostriformis bugensis has resulted in declines in native North American Unionoida mussels. Dreissenid mussels biofoul unionid mussels in large numbers and interfere with unionid movement, acquisition of food and ability to open and close their shells. Initial expectations for the Great Lakes were that unionids would be extirpated where they co-occur with dreissenids, but recently adult and juvenile unionids have been found alive in several apparent refugia. These unionid populations may persist due to reduced dreissenid biofouling in these areas, and/or due to processes that remove biofoulers. For example, locations inaccessible to veligers may reduce...
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Detailed point center quarter sampling (Mueller-Dombois and Ellenberg 1974) was conducted during late June along a 150-m long transect that started at a bird survey point. Four plots were sampled corresponding to the start, 50m, 100m and end points of each transect. At each of these four sample plots, species, diameter at breast height (dbh) and distance from the center of the plot were recorded tor trees (>8cm dbh) and saplings (≤8cm dbh). Number of standing snags (>8cm dbh and over 2 m tall) within 25m of the plot center were counted. Total basal area of each plot was estimated using a size 10 angle gauge and averaged over the four plots in each transect. As well, height of a representative canopy tree and understory...
Our model is a full-annual-cycle population model {hostetler2015full} that tracks groups of bat surviving through four seasons: breeding season/summer, fall migration, non-breeding/winter, and spring migration. Our state variables are groups of bats that use a specific maternity colony/breeding site and hibernaculum/non-breeding site. Bats are also accounted for by life stages (juveniles/first-year breeders versus adults) and seasonal habitats (breeding versus non-breeding) during each year, This leads to four states variable (here depicted in vector notation): the population of juveniles during the non-breeding season, the population of adults during the non-breeding season, the population of juveniles during the...
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Eggs were collected in the Upper Mississippi main stem (Pool 9 and Pool 11) during the summer of 2013. Using previously published morphological characteristics, eggs were positively identified as belonging to an invasive Asian carp genus. A subsample of these eggs was subsequently analyzed using molecular methods to determine species identity. Genetic identification of a total of 41 eggs was attempted using the cytochrome c oxidase 1 (COI) gene. Due to the preservation technique used (formalin) and resulting DNA degradation, sequences from only 17 individuals could be recovered. In all cases, non-carp cyprinids were identified as the most likely species identity (usually a Notropis spp.). In previously published...
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The Sediment-Contaminant Database for the Upper Mississippi River System contains information from a total of 3950 analyzed sediment samples, including 2697 from the Mississippi River, 440 from the Illinois River, and 813 from tributaries. These samples were collected during 1974 through 2000, with 262 samples from the 1970s, 2168 from the 1980s, 1518 from the 1990s, and 2 from the year 2000. The database contains data on metals, metalloids, nutrients, polynuclear aromatic hydrocarbons, insecticides, herbicides, fungicides, industrial compounds, sterols, petroleum-related compounds, and polychlorinated biphenyls in three types of samples: bed sediment (86.6% of the samples), sediment trap (1.8%), and pore water...
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c) We examined effects of flooding on supply rates of 14 nutrients in floodplain areas invaded by Phalaris arundinacea (reed canarygrass), areas restored to young successional forests (browsed by white-tailed deer and unbrowsed), and remnant mature forests in the Upper Mississippi River floodplain. Plant Root Simulator ion-exchange probes were deployed for four separate 28-day periods. The first deployment occurred during flooded conditions, while the three subsequent deployments were conducted during progressively drier periods. Time after flooding corresponded with increases in NO3--N, K+ and Zn+2, decreases in H2PO4--P, Fe+3, Mn+2, and B(OH)4-B, a decrease followed by an increase in NH4+-N, Ca+2, Mg+2 and Al+3,...
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Tree swallows, Tachycineta bicolor, were sampled across the Great Lakes basin in 2010-2015 to provide a system-wide assessment of current exposure to organic contaminants. These results provide information identified as critical by land managers and regulators to assess the ‘Bird or Animal Deformity or Reproductive Problems’ Beneficial Use Impairment. Eggs were collected from 69 sites across all five Great Lakes, including 27 Areas of Concern (AOCs), some with multiple sites, and ten sites not listed as an AOC. Concentrations of organic contaminants in eggs were quantified and compared to background and reproductive effect thresholds. Approximately one-third of the AOCs had geometric mean concentrations of total...
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Data are population size estimates for monarch butterflies overwintering in Mexico as well as 76 potential stressors and 3 correlates. These stressors include disease, pesticide, herbicide, temperature, precipitation, and habitat loss measured for Mexican overwintering area and Southern, North Central, and Northeastern breeding areas.
This dataset includes quantifications of bigheaded carp DNA found in water samples collected from the Wabash River along transects at 3 sites over time. The samples were collected at 18 equidistant points in a transect across the river at each site. Samples were collected in 2013 on May 29, 30, 31, June 5, 6, 7, 8, 9, 10, 11, 16, 17, 19, 20, 21, and 22. Quantitative polymerase chain reaction (qPCR) was performed to determine the DNA concentrations in two replicates using the bigheaded carp assay defined in Merkes and others 2014.
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Tree swallow, Tachycineta bicolor, nestlings were collected from 60 sites in the Great Lakes which included multiple sites at 27 Areas of Concern (AOCs) and 6 sites not listed as AOCs from 2010 to 2014. Nestlings were measured for ethoxyresorufin-O-dealkylase (EROD) activity, chromosomal damage (DNA CV), and six measures of oxidative stress. Each of these bioindicators was divided into four groups from the highest to lowest values and the groups were compared to contaminant concentrations using multivariate analysis. Nestling contaminant concentrations included polychlorinated biphenyls (PCBs), polybrominated diphenyl ethers (PBDEs), perfluorinated compounds (PFCs), and 17 elements. Alkylated polycyclic aromatic...
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The data set includes delineation of sampling strata for the six study reaches of the UMRR Program’s LTRM element. Separate strata coverages exist for each of the three monitoring components (fish, vegetation, and water quality) to meet the differing sampling needs among components. Generally, the sampling strata consist of main channel, side channel, backwater, and impounded areas. The fish component further delineates a “shoreline” portion of the strata to be used for sampling gears deployed only along the shoreline. The data are raster in origin, with the center of each pixel representing the sampling location. Cell size is typically 50 meters, although several water quality strata are at 200 meter cell size.
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Contaminant exposure of tree swallows, Tachycineta bicolor, nesting in the Great Lakes basin was assessed in 2010 to 2014. Tree swallow nestlings were collected from 69 sites which included multiple sites at some of the 27 Areas of Concern (AOCs) and at nine non-AOC sites. Polycyclic aromatic hydrocarbon (PAHs), polychlorinated biphenyl (PCBs), and polybrominated diphenyl ether (PBDEs) concentrations were measured in nestling stomach contents. Concentrations of PCBs and PBDEs were measured in nestling carcasses. Perfluorinated compounds (PFCs) were measured in nestling plasma. Pooled dietary concentrations of total PAHs were highest at the Rouge River, MI AOC (1,856 ng/g wet weight) and lowest at White Lake, MI...
map background search result map search result map Spatial Variation in Biofouling of a Unionid Mussel (Lampsilis siliquoidea) Across the Western Basin of Lake Erie Data Asian carp eggs cannot be distinguished from other cyprinid species on the basis of morphology alone: Supporting Data WKBT Soils and Floodplain Nutrients data Sediment-Contaminant Database for the Upper Mississippi River System and Selected Tributaries (version 2) LTRM Fish Sampling Strata LTRM Vegetation Sampling Strata LTRM Water Quality Sampling Strata Wabash River, Indiana bigheaded carps environmental DNA: Data Birds as indicators of contaminants in the Great Lakes - Egg Contaminants Data Birds as indicators of contaminants in the Great Lakes Spatial habitat grid Seasonal trends in eDNA detection and occupancy of bigheaded carps, Wabash River, IN: Raw Data Spatial and temporal relationships between the invasive snail Bithynia tentaculata and submersed aquatic vegetation in Pool 8 of the Upper Mississippi River data UMRR Illinois River Alton Reach Bathymetry Footprint Effects of Flood Inundation and Invasion by Phalaris arundinacea on Nitrogen Cycling in an Upper Mississippi River Floodplain Forest data Monarch Threats Analysis: data Vermillion/Cannon River Bottoms Important Bird Area Raw Breeding bird survey data Vermillion/Cannon River Bottoms raw vegetation data from transect data EROD activity, chromosomal damage, and oxidative stress in response to contaminant exposure to tree swallows (Tachycineta bicolor) nesting in the Great Lakes Areas of Concern: Data Wabash River, Indiana bigheaded carps environmental DNA: Data WKBT Soils and Floodplain Nutrients data Spatial and temporal relationships between the invasive snail Bithynia tentaculata and submersed aquatic vegetation in Pool 8 of the Upper Mississippi River data Effects of Flood Inundation and Invasion by Phalaris arundinacea on Nitrogen Cycling in an Upper Mississippi River Floodplain Forest data Vermillion/Cannon River Bottoms raw vegetation data from transect data Vermillion/Cannon River Bottoms Important Bird Area Raw Breeding bird survey data Spatial Variation in Biofouling of a Unionid Mussel (Lampsilis siliquoidea) Across the Western Basin of Lake Erie Data LTRM Vegetation Sampling Strata Wabash River, Indiana bigheaded carps environmental DNA: Data Wabash River, Indiana bigheaded carps environmental DNA: Data Seasonal trends in eDNA detection and occupancy of bigheaded carps, Wabash River, IN: Raw Data LTRM Fish Sampling Strata LTRM Water Quality Sampling Strata Sediment-Contaminant Database for the Upper Mississippi River System and Selected Tributaries (version 2) Birds as indicators of contaminants in the Great Lakes - Egg Contaminants Data Birds as indicators of contaminants in the Great Lakes EROD activity, chromosomal damage, and oxidative stress in response to contaminant exposure to tree swallows (Tachycineta bicolor) nesting in the Great Lakes Areas of Concern: Data Spatial habitat grid Monarch Threats Analysis: data