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Freshwater fish are among the most vulnerable taxa to climate change globally but are generally understudied in tropical island ecosystems. Climate change is predicted to alter the intensity, frequency, and variability of extreme flow events on the Caribbean island of Puerto Rico. These changes may impact Caribbean native and non-native stream ecosystems and biota complex ways. We compiled an extensive dataset of native and non-native fish assemblages collected at 119 sites across Puerto Rico from 2005 to 2015. We coupled these data with stream flow indices and dam height to understand how flow dynamics drive fish assemblage structure. Sixteen percent of sites contained exclusively non-native species, 34% contained...
Categories: Data,
Publication;
Types: Citation;
Tags: Aquatic Biology,
Caribbean,
Caribbean ecosystems,
Hydrology,
USGS Science Data Catalog (SDC),
This script applies topic modeling to analyze literature trends of climate impacts to inland fish based on the papers within the Fish and Climate Change Database (FiCli, DOI: 10.5066/P9973SMC). Sections 1-8 loaded the .bib file with all of the papers in the database and cleaned the text. This included combining the title/abstract/keywords, removing non-informative words, stemming words, removing punctuation, and forming phrases (ie. climate change to climate_change). Sections 9-10 divided the papers into discrete topics by identifying the ideal number of topics and then using Latent Dirichlet Allocation (LDA) modeling and Gibbs sampling to assign topics to each paper. Sections 11-17 analyzed the topic modeling results...
Categories: Data,
Publication;
Types: Citation;
Tags: FiCli,
Fish and Climate Change Database,
Latent Dirichlet Allocation,
biota,
freshwater fishes,
This dataset contains information from 674 publications (academic and grey literature) that assessed the effects of climate variability and climate change on the 15 ungulate species that are native to the United States, Canada, Mexico, and Greenland. The publication contains literature published between 1947 and September 2020. Information documented includes study location, climate variables assessed, and ungulate outcomes measured (e.g., life history characteristics, population demographics, migratory behavior).
Categories: Data,
Publication;
Types: Citation;
Tags: Canada,
Greenland,
Mexico,
North America,
USGS Science Data Catalog (SDC),
The baseline map of the Butte Basin, the representative basin from the Central Valley, was generated first by delineating the extent of the landscape to be modeled, in agreement with the basin boundaries identified by the Central Valley Joint Venture.The Butte Basin (CV) encompasses a region approximately 44km x 64 km, and the map used contains 10,698 individual habitat patches and 179,964 acres of possible foreageable area. Patch habitat types were identified by a combination of USDA CropScape data (to identify agricultural habitat patches including rice and corn) and other local mapping data made available through collaboration with USGS. Habitat flood schedules were generated using the Water Evaluation and Planning...
Categories: Data,
Publication;
Types: Citation;
Tags: Butte,
California,
Central Valley aquifer system,
Colusa,
Glenn,
Habitat condition, both acres flooded and timing of inundation, were determined using remote sensing images from Landsat 5 and 8 for the Lower Klamath Basin, the representative basin for the southern Oregon and northeast California (SONEC) region. The dataset includes proportional water coverage (acres) for 8,825 distinct patches in Lower Klamath over 6 different time periods (1984-89; 1990-94; 1995-99; 2000-04; 2005-09; 2010-16), with a total of 368,301 acres of possibly foreageable land.
Categories: Data,
Publication;
Types: Citation,
Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: California,
Klamath,
Lower Klamath,
Modoc,
Oregon,
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