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The spring 2017 mainland sea otter count began on April 30, and although the shore-based counts were completed by May 12, 2017, the aerial counts were not completed until July 12, 2017. Overall viewing conditions this year were good, although not as good as conditions experienced during the 2016 spring census (View Score 2.4 versus 3.1, where 0=poor, 1=fair, 2=good, 3=very good, and 4=excellent). The surface canopies of kelp (Macrocystis sp.) were considered by most participants to be considerably below normal for this time of year in most areas of the mainland range. Sea otters along the mainland coast were surveyed from Pillar Point in San Mateo County in the north to Rincon Point in the south at the Santa Barbara/Ventura...
The U.S. Geological Survey, Western Ecological Research Center (USGS-WERC) was requested by the Bureau of Ocean Energy Management (BOEM) to create a database for marine birds of the California Current System (CCS) that would allow quantification and species ranking regarding vulnerability to offshore wind energy infrastructure (OWEI). This was needed so that resource managers could evaluate potential impacts associated with siting and construction of OWEI within the California Current System section of the Pacific Offshore Continental Shelf, including California, Oregon, and Washington. Along with its accompanying Open File Report (OFR), this comprehensive database can be used (and modified or updated) to quantify...
Categories: Data Release - Revised;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Biota,
California,
California Current System,
Environment,
Ocean wind energy,
To improve our understanding of health and immune function in tortoises, we evaluated both standard blood diagnostic (body condition, hematologic, plasma biochemistry values, trace elements, plasma proteins, vitamin A levels) and gene transcription profiles in 21 adult tortoises (11 clinically abnormal; 10 clinically normal) from Clark County, NV, USA. Necropsy and histology evaluations from clinically abnormal tortoises revealed multiple physiological complications, with moderate to severe rhinitis or pneumonia being the primary cause of morbidity in all but one of the examined animals. Improved methods for health assessments are an important element of monitoring tortoise population recovery and can support the...
Categories: Data;
Tags: Clark County, Nevada,
Hidden Valley,
USGS Science Data Catalog (SDC),
biota,
health
(i) This dataset presents macroscopic and microscopic pathological findings and bacteriology of 178 tadpoles diagnosed with Severe Perkinsea Infections. (ii) Specimen were collected and submitted to the NWHC as part of mortality investigations and collection of specimen from apparently healthy populations as part of ongoing amphibian health monitoring. (iii) Necropsies and gross evaluation of carcasses were carried out under a dissecting microscope. (iv) Severe Perkinsea Infection was confirmed in each specimen by histological observation of pathological changes in tissues with presence of Perkinsea-like organisms in at least one organ, including brain, eyes, gastrointestinal tract, gills, heart, liver, lungs, kidney,...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: USGS Science Data Catalog (SDC),
Unites States of Ameica,
amphibian,
biota,
case definition,
These data were compiled to evaluate the reproductive ecology of Agassiz's desert tortoises (Gopherus agassizzi) in the Sonoran Desert of California using two populations within Joshua Tree National Park, including five reproductive seasons that spanned 20 years (1997-1999, 2015-2016). Compared to their conspecifics inhabiting the Mojave Desert, the reproductive ecology of G. agassizii in the Sonoran Desert is understudied. Climatic variation between the two deserts can affect reproductive ecology, including fecundity and clutch phenology. Mature female tortoises (straight-line carapace length ≥ 20 cm) outfitted with radiotransmitters were located and X-radiographed approximately every 10-14 days during the reproductive...
Categories: Data;
Tags: Agassiz's desert tortoise,
California,
Ecology,
Geography,
Gopherus agassizii,
This dataset represents an archived record of annual California sea otter surveys from 1985-2014. Survey procedures involve counting animals during the "spring survey" -- generally beginning in late April or early May and usually ending in late May early June but may extend into early July, depending on weather conditions. Annual surveys are organized by survey year and within each year, three shapefiles are included: census summary of southern sea otter, extra limit counts of southern sea otter, and range extent of southern sea otter. The surveys, conducted cooperatively by scientists of the U.S. Geological Survey, California Department of Fish and Wildlife, U.S. Fish and Wildlife Service and Monterey Bay Aquarium...
Categories: Data;
Tags: California,
Central California Coastal,
Coast,
Southern California Coastal,
USGS Science Data Catalog (SDC),
The point data file ("Soda Fire Point and Pasture Data (2016).Point Data.csv") includes 2016 vegetative cover values of exotic annual grass and perennial grass measured within three different types of plots for 75 pastures in the Soda Fire, which burned in 2015: 6m² plot using a grid-point intercept photo software, SamplePoint (Booth et al. 2006), 1m² quadrat using an unguided rapid ocular estimate in the field, 531m² circular plot using an unguided rapid ocular estimate in the field. Smaller plots were nested within larger plots. The pasture data file ("Soda Fire Point and Pasture Data (2016).Pasture Data.csv") includes pasture level metrics of area, elevation, precipitation, slope, heatload, soils, and herbicide...
These data describe the catch and biological data from 363 bottom-set gill-net lifts distributed throughout Lake Michigan (including main basin and Green Bay) between April and November in 1930–1932. Data collected from the R/V Fulmar were recorded in notebooks and are now archived at the U.S. Geological Survey’s Great Lakes Science Center. Each lift included 1–7 gangs of linen gill nets. Each gang comprised 3–5 panels each having a length of 155 m, a height of 1.5 m, and a (stretch-)mesh size of either 60, 64, 67, 70, or 76 mm. The digitization of the Fulmar data notebooks was started in the late 1990s and finished in this study.
This dataset is from a restoration field study conducted at seven sites distributed across the southern Colorado Plateau in northern Arizona as part of the RestoreNet dryland restoration field trial network. The data consist of post-experimental restoration treatment (2018-2019) plant density and height measurements along with site precipitation, temperature, and soils data. Plant data were collected through plot monitoring visits distributed throughout the first year following restoration treatments and seeding.
The data document the results of several microbe bioassays performed by the USGS on Phragmites australis plants, including those performed on mature leaves, seedlings, and dead leaf tissues exploration of the literature to find accounts of microbes associated with Phragmites worldwide. For the bioassays, we prepared 162 pure cultures isolated from Phragmites plants in North America along the east coast, Florida, the Gulf of Mexico, and the Great Lakes area, 125 of which were from a previous study, and 38 represent new collections. The DNA sequences used to identify the 37 new collections are included. Microbes were isolated from plants collected from 2015-2018. We performed assays using both North American plant...
These data were compiled for a manuscript in which 1) we develop a water temperature model for the major river segments and tributaries of the Colorado River basin, including the Colorado, Green, Yampa, White, and San Juan rivers; 2) we link modeled water temperature to fish population data to predict the probability native and nonnative species will be common in the future in a warming climate; and 3) assess the degree to which dams create thermal discontinuity in summer in river segments across the western US. Per goal #1, we developed a water temperature model using data spanning 1985-2015 that predicts water temperature every 1 mile (1.6-km) in rivers both now and in the future due to the potential influence...
This dataset provides spatial predictions of habitat suitability for Gopherus agassizii (Agassiz’s desert tortoise), Gopherus morafkai (Morafka’s desert tortoise) and a pooled-species model under current conditions (1950 – 2000 yr). The raster layers contained here accompany the manuscript Inman et al. 2019 and were used to evaluate subtle ecological niche differences between G. agassizii and G. morafkai, and identify local species-environment relationships. Spatial predictions of habitat suitability were created using MaxEnt version 3.4.0 (Phillips et al., 2006), a widely-used software for SDM in presence-background frameworks. Detailed methods are provided in Inman et al. 2019. Inman et al. 2019. Local niche...
These data were collected as part of a field trial to test the effectiveness of a sylvatic plague vaccine (see Rocke et al., 2017 for details). Vaccine and control plots were selected randomly from the available pairs at each location. Baits containing Rhodamine B, a biomarker, were distributed at each plot. At least 1 week and no more than 2 months post-baiting each year, local collaborators captured, marked, and sampled prairie dogs. Hair and whisker samples were collected from up to 50 unique prairie dogs from each plot each year. Sex, age, weight, and the identity of all current-year and prior-year recaptures were recorded for each captured animal. In the laboratory, hair/whiskers were assessed for the presence...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Arizona,
Awapa Plateau,
Buffalo Gap National Grasslands,
Cedar City,
Charles M. Russell National Wildlife Refuge,
This Benthic Invertebrate Community Analysis dataset, a conceptual subgroup of the Lake Erie Ecological Investigations (LEEI) dataset, focuses on the benthic invertebrates sampled at Areas of Concern (AOCs) on Lake Erie. Per the Quality Assurance Project Plan (QAPP), the invertebrate samples were taken from sediments remaining from the sediment analysis. Identification of the invertebrates was completed by the same invertebrate taxonomist for both the 1998-2000 evaluation and 1986-87 historical evaluation (Smith et al. 1994) for increased consistency. Oligochaetes were identified to species if possible, chironomids were identified to genus, as adult specimens are needed for specific identification, and other taxa...
This raster represents a continuous surface of sage-grouse habitat suitability index (HSI) values for northeastern California. HSIs were calculated for spring (mid-March to June), summer (July to mid-October), and winter (November to March) sage-grouse seasons, and then multiplied together to create this composite dataset.
Categories: Data;
Types: Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: California,
Great Basin,
Greater Sage-Grouse,
Habitat,
Nevada,
These data include a row for each duck nest equipped with a small video camera. We present the location of the nest, the timing of the start of hatch, the timing of the end of hatch, and the timing of the departure of the hen and ducklings from the nest. Additionally, this table includes any predators that were observed at the nest depredating eggs prior to hatch and any predators that were observed at the nest between hatch and departure from the nest. These data support the following publication: "Sitting ducklings: Timing of hatch, nest departure, and predation risk for dabbling duck broods" by Sarah H. Peterson, Joshua T. Ackerman, Mark P. Herzog, C. Alex Hartman, Rebecca Croston, Cliff L. Feldheim, and Michael...
Categories: Data;
Tags: Grizzly Island Wildlife Area,
Mareca strepera,
Suisun Marsh,
USGS Science Data Catalog (SDC),
Wildlife Biology,
The dataset supports a larger study that examined the impacts of three tackifiers (guar, psyllium, and polyacrylamide) on growth of two dryland mosses (Bryum argenteum and Syntrichia ruralis). Moss fragments were grown in petri dishes and subjected to individual tackifiers in one of three possible concentrations (0.5x, 1x, or 2x) of the respective manufacturer's recommended application rate. Distilled water was used as a control treatment, giving a total of ten treatments (nine tackifier-concentration combinations and a water control). Bryum fragments were watered four times daily for six weeks and Syntrichia fragments were watered twice daily for five weeks, after which the experiments were concluded. Shoot length,...
The sea-cliff bedstraw (Galium buxifolium) data set contains two types of information, formatted as CSVs: 1) Spatial coordinates (WGS 84) of known population occurrences on Santa Cruz and San Miguel Islands, California, as of 2006 (sensitive locality information); 2) Demographic data measured at four populations growing on Santa Cruz Island. Three of the populations were measured in 2005 and 2006, the fourth was measured in 2005, 2006, 2008, 2010, 2011, and 2014. These data support the following publication: McEachern, K., Chess, K.A., Flagg, K., and Niessen, K.G., 2019, Sea-cliff bedstraw (Galium buxifolium) patterns and trends, 2005–14, on Santa Cruz and San Miguel Islands, Channel Islands National Park, California:...
Monthly Standardize Precipitation Evapotranspiration Index (SPEI), Daily soil-water potential (MPa) and soil temperature (degree C) data for plots from SageSuccess. The SageSuccess Project is a joint effort between USGS, BLM, and FWS to understand how to establish big sagebrush and ultimately restore functioning sagebrush ecosystems. Improving the success of land management treatments to restore sagebrush-steppe is important for reducing the long-term impacts of rangeland fire on sage-grouse and over 350 other wildlife species that use these habitats.
These data represent simulated soil temperature and moisture conditions for current climate, and for future climate represented by all available climate models at two time periods during the 21st century. These data were used to: 1) quantify the direction and magnitude of expected changes in several measures of soil temperature and soil moisture, including the key variables used to distinguish the regimes used in the R and R categories; 2) assess how these changes will impact the geographic distribution of soil temperature and moisture regimes; and 3) explore the implications for using R and R categories for estimating future ecosystem resilience and resistance.
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