Sara J Oyler-McCance

Microsatellite data, boundaries of subpopulation centers, and estimated effective migration for greater sage-grouse collected in western North America between 1992 and 2015 (ver. 2.0, December 2022)

Characterizing genetic structure across a species’ range is relevant for management and conservation as it can be used to define population boundaries and quantify connectivity. Here, we characterized population structure and estimated effective migration in Greater Sage-grouse (Centrocercus urophasianus). Our objectives were to (1) describe large-scale patterns of population genetic structure and gene flow and (2) to characterize genetic subpopulation centers across the range of Greater Sage-grouse. Samples from 2,134 individuals were genotyped at 15 microsatellite loci. Using standard STRUCTURE and spatial principal components analyses, we found evidence for four or six areas of large-scale genetic differentiation...

Categories: Data, Data Release - Revised; Tags: Genetics, Subpopulation Center, USGS Science Data Catalog (SDC), Western North America, biota

Sample collection information, single nucleotide polymorphism, and microsatellite data for white-tailed ptarmigan across the species range generated in the Molecular Ecology Lab during 2016

This data release comprises a dataset that contains sample collection information and microsatellite genotypes, and another dataset that contains single nucleotide polymorphism (SNP) genotypes with sample collection information for populations of white-tailed ptarmigan across the species' range. There is also an additional file (accession numbers.xlsx) linking samples to accession numbers in Genbank. This data was collected in order to address the following: The delineation of intraspecific units that are evolutionarily and demographically distinct is an important step in the development of species-specific management plans. Neutral genetic variation has served as the primary data source for delineating units for...

Categories: Data; Tags: Alaska, Alberta, British Columbia, Colorado, Microsatellites, All tags... Montana, Mt. Evans, New Mexico, Rocky Mountain National Park, USGS Science Data Catalog (SDC), Utah, Vancouver, Washington, Yukon Territory, biological population management, biota, genetic diversity, Fewer tags

Whole genome sequencing of three North American large-bodied birds

The data release details the samples, methods, and raw data used to generate high-quality genome assemblies for greater sage-grouse (Centrocercus urophasianus), white-tailed ptarmigan (Lagopus leucura), and trumpeter swan (Cygnus buccinator). The raw data have been deposited in the Sequence Read Archive (SRA) of the National Center for Biotechnology Information (NCBI), the authoritative repository for public biological sequence data, and are not included in this data release. Instead, the accessions that link to those data via the NCBI portal (www.ncbi.nlm.nih.gov) are provided herein. The release consists of a single file, sample.metadata.txt, which maps NCBI accessions to the samples sequenced and the different...

Tags: Ecology, Genetics, North America, USGS Science Data Catalog (SDC), Wildlife Biology, All tags... biota, genetic diversity, genetics, ornithology, Fewer tags

Genotypes and cluster definitions for a range-wide greater sage-grouse dataset collected 2005-2017 (ver 1.1, January 2023)

Monitoring change in genetic diversity in wildlife populations across multiple scales could facilitate prioritization of conservation efforts. We used microsatellite genotypes from 7,080 previously collected genetic samples from across the greater sage-grouse (Centrocercus urophasianus) range to develop a modelling framework for estimating genetic diversity within a recently developed hierarchically nested monitoring framework (clusters). The majority of these genetic samples (n=6560) were used in previous research (Oyler-McCance et al. 2014; Cross et. al 2018; Row et. al. 2018). Genetic diversity values associated with clusters across multiple scales could facilitate the identification of areas with low genetic...

Categories: Data; Tags: California, Canada, Colorado, Idaho, Montana, All tags... Nevada, North Dakota, Oregon, Saskatchewan, South Dakota, USGS Science Data Catalog (SDC), Utah, Washington, Wyoming, biota, birds, genetics, greater sage-grouse, microsatellites, western United States, Fewer tags

Genetic data and genetic network attributes for rangewide Greater Sage-grouse network constructed in 2018 (ver. 2.0, December 2022)

Genetic networks can characterize complex genetic relationships among groups of individuals, which can be used to rank nodes most important to the overall connectivity of the system. Ranking allows scarce resources to be guided towards nodes integral to connectivity. The greater sage-grouse (Centrocercus urophasianus) is a species of conservation concern that breeds on spatially discrete leks that must remain connected by genetic exchange for population persistence. We genotyped 5,950 individuals, from 1,200 greater sage-grouse leks distributed across the entire species’ geographic range. We found a small world network composed of 458 nodes connected by 14,481 edges that are described here. The files associated...

Categories: Data, Data Release - Revised; Tags: USGS Science Data Catalog (SDC), Western North America, biological population management, biota, centrality, All tags... genetic diversity, graph theory, multi-scale conservation prioritization, network theory, Fewer tags