Whole genome sequencing of three North American large-bodied birds
Dates
Publication Date
2023-10-23
Time Period
2021-07-15
Citation
Cornman, R.S., Fike, J., and Oyler-McCance, S.J., 2023, Whole genome sequencing of three North American large-bodied birds: U.S. Geological Survey data release, https://doi.org/10.5066/P9DK14PM.
Summary
The data release details the samples, methods, and raw data used to generate high-quality genome assemblies for greater sage-grouse (Centrocercus urophasianus), white-tailed ptarmigan (Lagopus leucura), and trumpeter swan (Cygnus buccinator). The raw data have been deposited in the Sequence Read Archive (SRA) of the National Center for Biotechnology Information (NCBI), the authoritative repository for public biological sequence data, and are not included in this data release. Instead, the accessions that link to those data via the NCBI portal (www.ncbi.nlm.nih.gov) are provided herein. The release consists of a single file, sample.metadata.txt, which maps NCBI accessions to the samples sequenced and the different types of sequencing [...]
Summary
The data release details the samples, methods, and raw data used to generate high-quality genome assemblies for greater sage-grouse (Centrocercus urophasianus), white-tailed ptarmigan (Lagopus leucura), and trumpeter swan (Cygnus buccinator). The raw data have been deposited in the Sequence Read Archive (SRA) of the National Center for Biotechnology Information (NCBI), the authoritative repository for public biological sequence data, and are not included in this data release. Instead, the accessions that link to those data via the NCBI portal (www.ncbi.nlm.nih.gov) are provided herein. The release consists of a single file, sample.metadata.txt, which maps NCBI accessions to the samples sequenced and the different types of sequencing performed to generate the assemblies and annotate their gene features.
Click on title to download individual files attached to this item.
sample.metadata.txt
1.56 KB
text/plain
3.bird.genomes.xml Original FGDC Metadata
View
23.07 KB
application/fgdc+xml
Purpose
The data were collected to provide a reference-quality genome assembly for three birds species to add their scientific study, conservation, and management. The assembly accession pages include gene models predicted by NCBI using an automated pipeline. Investigators can browse a web-based genome viewer or download whole data sets, accessible through the accessions listed in the data files.
