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Fragment data from 11 nuclear microsatellite loci and sequence data from the mitochondrial cytochrome b gene were gathered from Arctic cod (Boreogadus saida) in the Beaufort and Chukchi seas. Mitogenomic analyses of Arctic cod and three other co-distributed gadoids (Polar cod [Arctogadus glacialis], Saffron cod [Eleginus gracilis], Walleye Pollock [Gadus chalcogrammus]) were also completed. Transcriptomic analyses of Arctic cod were used to identify genes associated with environmental perturbations. Genome-wide scans using RAD-Seq of Arctic cod and the co-distributed Polar Cod were collected.
Categories: Data;
Tags: Alaska,
Aleutian Islands,
Aquatic Biology,
Aquatic ecosystems,
Aquatic sciences, All tags...
Arctic cod,
Arctogadus glacialis,
Beaufort Sea,
Beaufort Sea,
Bering Sea,
Biota,
Boreogadus saida,
Canada,
Chukchi Sea,
DNA sequencing,
DNA, Mitochondrial,
Eleginus gracilis,
Environment,
Fish,
Fisheries,
Gadus chalcogrammus,
Gene flow,
Genetic structure,
Genetic variance,
Genetics,
Genetics,
Genomics,
Gulf of Alaska,
Gulf of Saint Lawrence,
Marine habitat,
Microsatellite Repeats,
Norton Sound,
Nova Scotia,
Polymerase chain reaction,
Population dynamics,
Population genetics,
Saffron cod,
Systematics and taxonomy,
USGS Science Data Catalog (SDC),
Walleye Pollock,
Wildlife Biology,
Yukon Territory, Fewer tags
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This dataset contains sampling information and genetic data of 12 novel microsatellite loci developed and polymorphic in the Sea Sandwort (Honckenya peploides) and screened in Merckia (Wilhelmsia physodes) from Alaska. The allele sizes for the 12 microsatellite loci developed in this study are included for two populations of Sea Sandwort (Fossil Beach, Kodiak and Egg Bay, Atka) and one population of Merckia (upper Coleen River, Brooks Range).
Categories: Data;
Tags: Alaska,
Aleutian Islands,
Angiosperms (Flowering Plants),
Biogeography,
Biota, All tags...
Botany,
Coastal Ecosystems,
Dicots,
Environment,
Gene flow,
Genetic diversity,
Genetic diversity,
Genetic variance,
Genetics,
Genetics,
High-Throughput Nucleotide Sequencing,
Indigenous vegetation,
Microsatellite repeats,
Plants,
Polymerase chain reaction,
Population dynamics,
Population genetics,
Ruderal environments,
Seed dispersal,
Terrestrial ecosystems,
Terrestrial environments,
USGS Science Data Catalog (SDC), Fewer tags
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This data set is comprised of one table with sampling information and NCBI BioProject accession numbers for sequence information of this amplicon-based study targeting Labyrinthula, Phytophthora, and Halophytophthora of known pathogenic and non-pathogenic [to eelgrass (Zostera marina)] strains from eDNA samples. eDNA samples included water, sediment, and eelgrass from Notsuke Wan (Cove) Japan, Safety Sound, Izembek Lagoon, Port Moller, Chignik Lagoon, and Frederick Sound, Alaska and cloacal swabs from waterfowl hunted near Cold Bay Alaska. Replicate samples and multiple sampling dates of the same location were included. Highly conserved primers which could differentiate species of interest were developed for four...
Categories: Data,
Data Release - Revised;
Tags: Alaska,
Animals/Vertebrates,
Aquatic Biology,
Aquatic ecosystems,
Biological informatics, All tags...
Biota,
Birds,
DNA Primers,
DNA, Mitochondrial,
Databases, Nucleic acid,
Decline (Plant disease),
Disease detection,
Disease spread,
Disease vectors,
Ducks/Geese/Swans,
Ecological processes,
Ecosystem,
Ecosystem diversity,
Environment,
Environmental DNA,
Environmental DNA,
Feasibility studies,
Field sampling,
Genetics,
Halophytophthora,
Hokkaido,
Izembek National Wildlife Refuge,
Japan,
Labyrinthula sp.,
Labyrinthula zosterae,
Marine biology,
Marine environment monitoring,
Mitochondrial DNA,
Ocean circulation,
Oceans and Seas,
Phytophthora gemini,
Plants,
Species/Population Interactions,
USGS Science Data Catalog (SDC),
Zostera marina,
eDNA, Fewer tags
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Two tables of data are included in this data release. The first table provides screening results for 32 previously described and/or published microsatellites and 1 sexing marker, primer redesigns for use in Mexican Spotted Owls in this data release, and size of markers in Mexican Spotted Owls. The second table provides microsatellite and sexing marker results for 10 tissue and 98 feather samples for 11 microsatellite markers identified as variable in initial marker screenings.
Categories: Data;
Tags: Alleles,
Animals/Vertebrates,
Apache-Sitgreaves National Forest,
Arizona,
Biota, All tags...
Birds,
Birds of prey,
Breeding sites,
Capture-recapture studies,
Coconino National Forest,
DNA,
DNA Primers,
Environment,
Genetic diversity,
Genetic markers,
Genetics,
Genetics,
Genotype,
Grand Canyon National Park,
Kaibab National Forest,
Los Alamos,
Mexican Spotted Owl,
Microsatellite Repeats,
New Mexico,
Polymerase chain reaction,
Raptors,
Sexing (plants & animals),
Strix occidentalis lucida,
Terrestrial ecosystems,
Threatened species,
Tonto National Forest,
USGS Science Data Catalog (SDC),
Walnut Canyon National Monument,
Wildlife,
Wildlife Biology, Fewer tags
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This data set contains allele sizes for 8 previously published and 16 novel microsatellite loci, and one microsatellite redesigned for amplification in Merlins (Falco columarius) associated with circadian clock control and polymorphism that has been associated with juvenile dispersal and migratory behavior in some avian species for Merlin (Falco columbarius) from North America (n=21). Allele sizes for the 16 microsatellite loci developed in this study are included for 12 Gyrfalcons (F. rusticolus) and 13 Peregrine Falcons (F. peregrinus). Additional population level data for Merlins and mtDNA will be added to this data release in the future.
Categories: Data;
Tags: Alaska,
Alleles,
Animals/Vertebrates,
Biota,
Birds, All tags...
Birds,
Birds of prey,
Cedar Grove Hawk Research Station,
DNA,
DNA sequencing,
Eagles/Falcons/Hawks and Allies,
Environment,
Falco columbarius,
Falco peregrinus,
Falco rusticolus,
Falconiformes,
Genetic diversity,
Genetic markers,
Genetics,
Genetics,
Hawk Ridge Bird Observatory,
Microsatellite Repeats,
Migratory birds,
Minnesota,
North Slope,
Polymerase chain reaction,
Polymorphism, Genetic,
Population dynamics,
Population genetics,
Site Fidelity,
Southcentral Alaska,
USGS Science Data Catalog (SDC),
Wildlife,
Wildlife Biology,
Wisconsin,
Yukon Delta,
Yukon-Kuskokwim Delta, Fewer tags
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