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  4. Genetic Data from Arctic, Polar, and Saffron Cod and Walleye Pollock, Alaska and Canada, 2011-2017

Genetic Data from Arctic, Polar, and Saffron Cod and Walleye Pollock, Alaska and Canada, 2011-2017

Dates

Publication Date
Start Date
2006
End Date
2015

Citation

Wilson, R.E., Pierson, B.J., Sage, G.K., Sonsthagen, S.A., Gravley, M.C., Menning, D.M., and Talbot, S.L., 2018, Genetic data from Arctic, Polar, and Saffron Cod and Walleye Pollock, Alaska and Canada, 2011-2017: U.S. Geological Survey data release, https://doi.org/10.5066/F7CF9P23.

Summary

Fragment data from 11 nuclear microsatellite loci and sequence data from the mitochondrial cytochrome b gene were gathered from Arctic cod (Boreogadus saida) in the Beaufort and Chukchi seas. Mitogenomic analyses of Arctic cod and three other co-distributed gadoids (Polar cod [Arctogadus glacialis], Saffron cod [Eleginus gracilis], Walleye Pollock [Gadus chalcogrammus]) were also completed. Transcriptomic analyses of Arctic cod were used to identify genes associated with environmental perturbations. Genome-wide scans using RAD-Seq of Arctic cod and the co-distributed Polar Cod were collected.

Contacts

Point of Contact :
Alaska Science Center
Originator :
Robert E Wilson, Barbara J Pierson, Kevin Sage, Sarah A Sonsthagen, Megan C Gravley, Damian M Menning, Sandra L Talbot
Metadata Contact :
Alaska Science Center
Publisher :
Alaska Science Center
Distributor :
USGS ScienceBase Team
SDC Data Owner :
Alaska Science Center
USGS Mission Area :
Ecosystems

Attached Files

Click on title to download individual files attached to this item.

cod_microsatMitogenome_arcticNAmer_wilson_metadata.xml
Original FGDC Metadata
View 		108.58 KB application/fgdc+xml
cod_geneOntology_arcticNAmer_wilson.csv 713.25 KB text/csv
cod_microsatMitogenome_arcticNAmer_wilson.csv 182.07 KB text/csv
cod_microsatMitogenome_arcticNAmer_wilson_metadata.html 202.87 KB text/html
cod_mitogenomePrimers_arcticNAmer_wilson.csv 1,002 Bytes text/csv
cod_transcriptomeBlast_arcticNAmer_wilson.csv 978.17 KB text/csv

Purpose

Data were collected to provide genetic, genomic and transcriptomic products that will provide insight into the population genetics and evolutionary history of Arctic cod (Boreogadus saida) within the context of changing Arctic ecosystems.

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Communities

  • Alaska Science Center (ASC)

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Additional Information

Identifiers

Type Scheme Key
DOI https://www.sciencebase.gov/vocab/category/item/identifier doi:10.5066/F7CF9P23

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