Suggested Reading and Supportive Literature

Summary

Agouridis, C. T., S. R. Workman, R. C. Warner, and G. D. Jennings. 2005. Livestock grazing management impacts on stream water quality: a review. Journal of the American Water Resources Association 41(3):591-606. Ali, Muna, and T. R. Sreekrishnan. 2001. Aquatic toxicity from pulp and paper mill effluents: a review. Advances in Environmental Research 5(2): 175-196. Allan, J. D. (2004). Landscapes and riverscapes: the influence of land use on stream ecosystems. Annual Review of Ecology, Evolution, and Systematics 35:257-284. Barbier, E.B., S.D. Hacker, C. Kennedy, E.W. Koch, A.C. Stier, and B.R. Silliman. 2011. The value of estuarine and coastal ecosystem services. Ecological Monographs 81:169-193. Beaulieu, J. J., C. T. Nietch, and [...]

Summary

Agouridis, C. T., S. R. Workman, R. C. Warner, and G. D. Jennings. 2005. Livestock grazing management impacts on stream water quality: a review. Journal of the American Water Resources Association 41(3):591-606.

Ali, Muna, and T. R. Sreekrishnan. 2001. Aquatic toxicity from pulp and paper mill effluents: a review. Advances in Environmental Research 5(2): 175-196.

Allan, J. D. (2004). Landscapes and riverscapes: the influence of land use on stream ecosystems. Annual Review of Ecology, Evolution, and Systematics 35:257-284.

Barbier, E.B., S.D. Hacker, C. Kennedy, E.W. Koch, A.C. Stier, and B.R. Silliman. 2011. The value of estuarine and coastal ecosystem services. Ecological Monographs 81:169-193.

Beaulieu, J. J., C. T. Nietch, and J. L. Young. 2015. Controls on nitrous oxide production and consumption in reservoirs of the Ohio River Basin. Journal of Geophysical Research: Biogeosciences [online] 120:1995–2010. DOI: 10.1002/2015JG002941.

Beck, M.W., K.L. Heck Jr., K.W. Able, D.L. Childers, D.B. Eggleston, B.M. Gillanders, B.S. Halpern, C.G. Hays, K. Hoshino, T.J. Minello, R.J. Orth, P.F. Sheridan, and M.P. Weinstein. 2003. The role of nearshore ecosystems as fish and shellfish nurseries. Issues in Ecology 11:1-12.

Blazer, V. S., L. R. Iwanowicz, and P. C. Baumann. 2006. Fish Health Study Ashtabula River Natural resource damage assessment. U.S. Geological Survey, Final Report OF2006-1137, Leetown Science Center, West Virginia.

Brasher, A. M. D. 2003. Impacts of human disturbances on biotic communities in Hawaiian streams. Bioscience 53(11):1052-1060.

Bricker, S., B. Longstaff, W. Dennison, A. Jones, K. Boicourt, C. Wicks, and J. Woerner. 2007. Effects of nutrient enrichment in the nation’s estuaries: A decade of change. NOAA Coastal Ocean Program Decision Analysis Series No. 26. National Centers for Coastal Ocean Science, Silver Spring, Maryland. http://www2.coastalscience.noaa.gov/publications/handler.aspx?resource=vX3scnf/e32wt9OTbjJTmmAMIyuHUONRod3PyaKPzgg=.

Brown, H., T.J. Minello, G.A. Matthews, M. Fisher, E.J. Anderson, R. Reidel, and D.L. Leffler. 2013. Nekton from fishery independent trawl samples in Estuaries of the US Gulf of Mexico: a Comparative Assessment of Gulf Estuarine Systems (CAGES). NOAA Technical Memorandum NMFS-SEFSC-647.

Budy, P., S. Wood, and B. Roper. 2012. A study of the spawning ecology and early life history survival of Bonneville Cutthroat Trout. North American Journal of Fisheries Management 32:436-449.

Burkholder, J. M., D. A. Dickey, C. A. Kinder, R. E. Reed, M. A. Mallin, M. R. McIver, L. B. Cahoon, G. Melia, C. Brownie, J. Smith, N. Deamer, J. Springer, H. B. Glasgow, and D. Toms. 2006. Comprehensive trend analysis of nutrients and related variables in a large eutrophic estuary: A decadal study of anthropogenic and climatic influences. Limnology and Oceanography . 51(1): 463-487.

Chaput, G., Pratt, T.C., Cairns, D.K., Clarke, K.D., Bradford, R.G., Mathers, A., and Verreault, G. 2014. Recovery Potential Assessment for the American Eel ( Anguilla rostrata) for eastern Canada: description and quantification of threats. In: Department of Fisheries and Oceans, Canadian Science Advisory Secretariat Research Document 2013/135. vi+ 90p.

Cheng, C.L. 2014. Low-flow characteristics of streams in the Lahaina District, West Maui, Hawaiʻi. U.S. Geological Survey Scientific Investigations Report 2014–5087 http://dx.doi.org/10.3133/sir20145087.

Cooper, A. R., D. M. Infante, K. Wehrly, L. Wang, and T. Brendan. 2016. Understanding large-scale dam influences on fishes: Identifying indicators and quantifying effects. Ecological Indicators 61:646-657.

Cressie, N., C.A. Calder, J.S. Clark, J.M.V. Hoef, and C.K. Wikle. 2009. Accounting for uncertainty in ecological analysis: the strengths and limitations of hierarchical statistical modeling. Ecological Applications 19(3):553-570.

Daniel, W. M., D. M. Infante, R. M. Hughes, P. C. Esselman, Y. P. Tsang, D. Wieferich, K. Herreman, A. R. Cooper, L. Wang, and William W. Taylor. 2015. Coal and mineral mines as a regional source of stress to stream fish assemblages. Ecological Indicators 50:50-61.

Danz, N. P., Niemi, G. J., Regal, R. R., Hollenhorst, T., Johnson, L. B., Hanowski, J. M., Axler, R. P., Ciborowski, J .J. H., Hrabik, T., Brady, V. J., Kelly, J. R., Morrice, J. A., Brazner, J. C., Howe, R. W., Johnston, C. A., Host, G. E. (2007). Integrated measures of anthropogenic stress in the US Great Lakes basin. Environmental Management, 39(5), 631-647. doi: 10.1007/s00267-005-0293-0

Deegan, L.A., J.T. Finn, S.G. Ayvazian, C.A. Ryder-Kieffer, and J. Buonaccorsi. 1997. Development and validation of an estuarine biotic integrity index. Estuaries 20:601-617.

Engle, V.D. 2011. Estimating the provision of ecosystem services by Gulf of Mexico coastal wetlands. Wetlands 31:179-193.

Esselman, P.C., D.M. Infante, L. Wang, D. Wu, A.R. Cooper, and W.W. Taylor. 2011. An index of cumulative disturbance to river fish habitats of the conterminous United States from landscape anthropogenic activities. Ecological Restoration 29:133-151.

Esselman, P.C., D. M. Infante, L. Wang, A. Cooper, D. Wieferich, Y. P. Tsang, D. Thornbrugh, and W. W. Taylor. 2013. Regional fish community indicators of ecological condition for rivers of the conterminous United States. Ecological Indicators 26:163-173.

Gangloff, M.M. and J.W. Feminella. 2007. Stream channel geomorphology influences mussel abundance in southern Appalachian streams, U.S.A. Freshwater Biology 52(1):64-74.

Greene, C.M., K. Blackhart, J. Nohner, A. Candelmo, and D.M. Nelson. 2014. A national assessment of stressors to estuarine fish habitats in the contiguous USA. Estuaries and Coasts 38(3):782-799.

Hale, S.S., J.F. Paul, and J.F. Heltshe. 2004. Watershed landscape indicators of estuarine benthic condition. Estuaries 27:283-295.

Halpern, B.S., S. Walbridge, K.A. Selkoe, C.V. Kappel, F. Micheli, C. D’Agrosa, J.F. Bruno, K.S. Casey, C. Ebert, H.E. Fox, R. Fujita, D. Heinemann, H.S. Lenihan, E.M.P. Madin, M.T. Perry, E.R. Selig, M. Spalding, R. Steneck, and R. Watson. 2008. A global map of human impact on marine ecosystems. Science 319:948-952.

Higashi, G. R., and R. T. Nishimoto. 2007. The point quadrant method: rapid assessment of Hawaiian streams. in E. N.L., and F. J.M., editors. Biology of Hawaiian Streams and Estuaries pages 305-312.

Hofmann, L. and R. E. Ries. 1991. Relationship of soil and plant characteristics to erosion and runoff on pasture and range. Journal of Soil and Water Conservation 46(2):143-147.

Hothorn, T., K. Hornik, and A. Zeileis. 2006. Unbiased recursive partitioning: a conditional inference framework. Journal of Computational and Graphical Statistics 15(3):24.

Jordan, S.J., L.M. Smith, and J.A. Nestlerode. 2008. Cumulative effects of coastal habitat alterations on fishery resources: toward prediction at regional scales. Ecology and Society [online] 14(1):16 http://www.ecologyandsociety.org/vol14/iss1/art16/.

Keferl, E.P. 1993. The status of freshwater mussels in some Georgia, South Carolina and North Carolina waters. Proccedings of the 1993 Georgia Water Resources Conference. Athens, Georgia. https://smartech.gatech.edu/bitstream/handle/1853/33094/KeferiE-93.pdf?sequence=1

Kelble, C. R., E. M. Johns, W. K. Nuttle, T. N. Lee, R. H. Smith, and P. B. Ortner. 2007. Salinity patterns of Florida Bay. Estuarine, Coastal and Shelf Science 71:318-334.

Kennish, M.J. 2002. Environmental threats and environmental future of estuaries. Environmental Conservation 29:78-107.

Mallin, M. A. and L. B. Cahoon. 2003. Industrialized animal production—a major source of nutrient and microbial pollution to aquatic ecosystems. Population and Environment 24(5):369-385.

Machut, L. S., K. E. Limburg, R. E. Schmidt & D. Dittman. 2007. Anthropogenic Impacts on American Eel Demographics in Hudson River Tributaries, New York. Transactions of the American Fisheries Society 136(6):1699-1713.

Melles, S. J., N. E. Jones, and B. Schmidt. 2012. Review of theoretical developments in stream ecology and their influence on stream classification and conservation planning. Freshwater Biology 57(3):415-434.

Miller et al., In Review. Hierarchical modeling shows the effect of watershed stressors on fish habitats in Gulf estuaries.

National Fish Habitat Board. 2010. Through a Fish’s Eye: The Status of Fish Habitats in the United States 2010. Association of Fish and Wildlife Agencies, Washington, D.C. http://www.fishhabitat.org/files/uploads/fishhabitatreport.pdf.

National Fish Habitat Action Plan. 2006. National Fish Habitat Action Plan: Cooperation, Investment, Stewardship. http://www.fishhabitat.org/files/uploads/National_Fish_Habitat_Action_Plan_2006.pdf.

National Research Council. 2003. Cumulative environmental effects of oil and gas activities on Alaska’s North Slope. National Academies Press, Washington D.C. http://www.nap.edu.

Omernik, J. M. (1987). Ecoregions of the conterminous United States. Annals of the Association of American geographers 77(1):118-125.

Sallenave, R., C. Crarrasco, and D. E. Cowley. 2010. Fishes in the middle and lower Rio Grande irrigation systems of New Mexico. New Mexico State University, Cooperative Extension Service, College of Agricultural, Consumer and Environmental Services, Circular 653, Las Cruces, New Mexico.

Schepers, J. S. and D. D. Francis. 1982. Chemical water quality of runoff from grazing land in Nebraska: I. Influence of grazing livestock. Journal of Environmental Quality 11(3):351-354.

Stets, E. G., V. J. Kelly, and C. G. Crawford. 2015. Regional and Temporal Differences in Nitrate Trends Discerned from Long-Term Water Quality Monitoring Data. Journal of the American Water Resources Association 51(5):1394–1407.

Stoddard, J.L., A.T. Herlihy, D.V. Peck, R.M. Hughes, T.R. Whittier, and E. Tarquinio. 2008. A process for creating multimetric indices for large-scale aquatic surveys. Journal of the North American Benthological Society 27:878–891.

Tingley III, R.W., Infante, D.M., MacKenzie, R.A., and Tsang, Y-P. In Preparation. An ecological reach classification of Hawaiian streams.

Tsang, Y. P., D. Wieferich, K. Fung, D. M. Infante, and A. R. Cooper. 2014. An approach for aggregating upstream catchment information to support research and management of fluvial systems across large landscapes. SpringerPlus 3:589-597.

United States Environmental Protection Agency. 2006. National Wadeable Streams Assessment: A Collaborative Survey of the Nation’s Streams. United States Environmental Protection Agency, Office of Research and Development, EPA/841/B-06/002,
Washington, D.C.

Wang, L., D. M. Infante, P. C. Esselman, A. Cooper, D. Wu, W. W. Taylor, D. Beard, G. Whelan, and A. Ostroff. 2011. A hierarchical spatial framework and database for the National river fish habitat condition assessment. Fisheries 36:436-449.

Wang, L., D. M. Infante, C. Riseng, and K. Wehrly. In Review. Advancement of geospatial capability in enhancing aquatic ecosystem research and management. Geoinformatics and Geostatistics.

Webber, P. A., P. D. Thompson, and P. Budy. 2012. Status and structure of two populations of the Bluehead Sucker ( Catostomus discobolus) in the Weber River, Utah. The Southwestern Naturalist 57(3):267-276.

Wieferich, D., W. M. Daniel, and D. M. Infante. 2015. Enhancing the utility of the NHDPlus river coverage in the conterminous United States: Characterizing ecological river reaches for improved management and summary of information. Fisheries 40:562-564.

Contacts

Author :: Steve Crawford, Gary Whelan, Dana M. Infante, Kristan Blackhart, Wesley M. Daniel, Pam L Fuller, Timothy Birdsong, Peter M Ruhl
Curator :: Daniel J Wieferich, Ricardo McClees-Funinan

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The U.S Geological Survey (USGS) is partnering with the National Fish Habitat Partnership (NFHP) to produce the 2015 report entitled, "Through a Fish's Eye: The Status of Fish Habitats in the United States 2015". The information contained within this item is a product of NFHP. The Bureau is neither responsible nor liable for the accuracy or the use of the scientific content within this item. This content is considered preliminary pending subsequent review and approval.

Suggested Reading and Supportive Literature

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Summary

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