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Metabolomics: Developing a chemical specific fingerprint data

Dates

Publication Date
Start Date
2015-12-10
End Date
2016-02-10

Citation

Putnam, J., 2017, Metabolomics: Developing a chemical specific fingerprint data: U.S. Geological Survey data release, https://doi.org/10.5066/F7KH0KGC.

Summary

We combine cell assays and metabolomics to create a powerful tool, which emerges to elevate the identification of new control chemicals. We combined the use of bigheaded carp fry cell line with metabolite profiling to describe the dose response to thiram. Thiram is a registered pesticide commonly used as a fungicide in the field or as a seed protectant and is known to be toxic to fish. Seven concentrations of thiram were used to dose bighead carp fry cells and silver carp fry cells. We identified 700 metabolomic markers and 41 of those markers exhibited a dose response to thiram in the bighead carp fry cells. We identified 1590 metabolomic markers with 205 of those markers exhibited a dose response to thiram in the silver carp fry [...]

Contacts

Point of Contact :
Joel G Putnam
Originator :
Joel G Putnam
Metadata Contact :
Joel G Putnam
SDC Data Owner :
Upper Midwest Environmental Sciences Center
USGS Mission Area :
Ecosystems
Distributor :
U.S. Geological Survey - ScienceBase

Attached Files

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BHC supplement - Table 1.csv 372.22 KB text/csv
SVC supplement - Table 2.csv 498.55 KB text/csv

Purpose

The data was collected using a high performance liquid chromatography unit linked with a time of flight mass spectrometer (HPLC-QTOF). Further statistical analysis of this data may provide answers to additional biological research.

Communities

  • USGS Data Release Products
  • Upper Midwest Environmental Sciences Center (UMESC)

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Additional Information

Identifiers

Type Scheme Key
DOI https://www.sciencebase.gov/vocab/category/item/identifier doi:10.5066/F7KH0KGC

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