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Microsatellite genotypes and DNA yield of artificially produced larval pallid sturgeon, Scaphirhynchus albus

Dates

Publication Date
Start Date
2017-12-08
End Date
2019-11-02

Citation

Flamio, R., Jr., Gocker, R.M., Buhman, A.C., Heist, E.J., Chojnacki, K.A., and Delonay, A.J., 2021, Microsatellite genotypes and DNA yield of artificially produced larval pallid sturgeon, Scaphirhynchus albus: U.S. Geological Survey data release, https://doi.org/10.5066/P9OTQTH8.

Summary

Data consist of genotypes for pallid sturgeon and paddlefish broodstock and artificially-produced larvae at 19 sturgeon microsatellite loci and four paddlefish loci. Microsatellite genotypes allowed confirmation of homozygous sturgeon DNA and absence of paddlefish DNA in haploid gynogens. Data also consist of DNA yield estimates for haploid gynogens for proof of concept that haploid gynogens can provide sufficient DNA quantity for restriction site-associated DNA sequencing studies.

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Larva_DNA_yield.txt 1.87 KB text/plain
Microsatellite_Genotypes.txt 37.3 KB text/plain

Purpose

Spawning, propagation, and recovery of the federally endangered pallid sturgeon (Scaphirhynchus albus) are complicated by morphological similarity between pallid sturgeon and their hybrids with sympatric shovelnose sturgeon. Current molecular markers cannot reliably distinguish among the species and backcrosses, and development of reliable disomic markers is complicated by an ancient whole genome duplication in the Scaphirhynchus ancestor. Thus, these data were generated to confirm 100% homozygous DNA and estimate DNA yield of sturgeon larvae artificially produced by using various milt treatments to disallow sperm genetic contribution, and various female egg donors. Specimens with 100% homozygous sturgeon DNA can be ultimately used in a future study to generate a reference DNA sequence that may be helpful in discerning the wild caught sturgeon that are pure species from those with multigenerational backcrosses.

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  • Columbia Environmental Research Center (CERC)
  • USGS Data Release Products

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DOI https://www.sciencebase.gov/vocab/category/item/identifier doi:10.5066/P9OTQTH8

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