Even in heavily engineered river systems, climate still governs flood variability and thus still drives many levee breaks and geomorphic changes. We assemble a 155-year record of levee breaks for a major California river system to find that breaks occurred in 25% of years during the 20th Century. A relation between levee breaks and river discharge is present that sets a discharge threshold above which most levee breaks occurred. That threshold corresponds to small floods with recurrence intervals of ∼2–3 years. Statistical analysis illustrates that levee breaks and peak discharges cycle (broadly) on a 12–15 year time scale, in time with warm-wet storm patterns in California, but more slowly or more quickly than ENSO and PDO climate [...]