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  4. Data for Genomic Characterization of Highly Pathogenic H5 Avian Influenza Viruses from Alaska in 2022

Data for Genomic Characterization of Highly Pathogenic H5 Avian Influenza Viruses from Alaska in 2022

Dates

Publication Date
Start Date
2022-04-26
End Date
2022-12-18

Citation

Scott, L.C., Ahlstrom, C.A., Torchetti, M.K., Lenoch, J.B., Beckmen, K.B., Boldenow, M., Buck, E.J., Daniels, B., Dilione, K.E., Gerlach, R., Lantz, K., Matz, A., Poulson, R.L., Sheffield, G., Sinnett, D., Stallknecht, D.E., Stimmelmayr, R., Taylor, E., Williams, A.R., and Ramey, A.R., 2024, Data for genomic characterization of highly pathogenic H5 avian influenza viruses from Alaska in 2022: U.S. Geological Survey data release, https://doi.org/10.5066/P13RDHRQ.

Summary

This data set describes genomic sequence information from 2022 used to infer spatiotemporal trends pertaining to the introductions of highly pathogenic H5N1 avian influenza viruses into Alaska and spread among wild birds, backyard poultry, and mammals.

Contacts

Point of Contact :
Alaska Science Center
Originator :
Laura C Scott, Christina A Ahlstrom, Mia K. Torchetti, Julianna B. Lenoch, Kimberlee B. Beckmen, Megan Boldenow, Evan J. Buck, Daniels, Bryan, Krista E Dilione, Robert Gerlach, Kristina Lantz, Angela Matz, Rebecca L. Poulson, Gay Sheffield, David R. Sinnett, David E. Stallknecht, Raphaela Stimmelmayr, Eric Taylor, Alison Williams, Andy M Ramey
Metadata Contact :
Alaska Science Center
Publisher :
Alaska Science Center
Distributor :
USGS ScienceBase Team
SDC Data Owner :
Alaska Science Center
USGS Mission Area :
Ecosystems

Attached Files

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HPAI_genotype_alaska.csv 41.39 KB text/csv
HPAI_genotype_trend_metadata.html 97.46 KB text/html
HPAI_genotype_trend_metadata.xml
Original FGDC Metadata
View 		44.12 KB application/fgdc+xml
HPAI_geotype_alaska_taxonomy.csv 3.35 KB text/csv

Purpose

Data were collected by the U.S. Department of Agriculture through the testing of animals for highly pathogenic avian influenza and analyzed at the U.S. Geological Survey Alaska Science Center. Data can be used for deriving epidemiological inference pertaining to the occurrence and spread of highly pathogenic H5N1 avian influenza among animals represented by the samples described herein.

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Communities

  • Alaska Science Center (ASC)

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Identifiers

Type Scheme Key
DOI https://www.sciencebase.gov/vocab/category/item/identifier doi:10.5066/P13RDHRQ

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