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ROOT _ScienceBase Catalog __Upper Midwest Environmental Sciences Center (UMESC) ___Upper Midwest Environmental Sciences Center Data ____Birds, Bats, Insects, Amphibians Filters
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The USGS Upper Midwest Environmental Sciences Center developed a Monarch Relevant Land Cover data set covering the area of Canada. We used the 2010 land cover data set produced by the tri-national North American Land Change Monitoring System (NALCMS) and supported by the Commission for Environmental Cooperation (CEC) that depicts year 2010 land cover across North America at 30-meter spatial resolution, and incorporated additional spatially-explicit information to develop this land cover map. Additional sources of information included 2004 railroad data provided by The Atlas of Canada and the CEC, 2017 roads data provided by Statistics Canada, 2017 protected areas data provided by the CEC, and 2016 Canada provincial/territory...
To help determine whether Hg had a causal effect on corticosterone, we investigated the impact of experimental Hg intake on the corticosterone stress response in captive juvenile loons. Juveniles were subjected to three different feeding regimes: 0, 0.4 and 1.2 µg Hg (as MeHgCL)/g wet weight (ww) fish. We then measured baseline and 30 min post-solitary confinement stressor corticosterone concentrations. The data set consists of times of blood draws and dietary Hg levels. Blood samples and data set were provided to the senior author for analysis.
Categories: Data;
Types: Citation;
Tags: Corticosterone,
Loon,
Piscivorous bird,
Stress,
USGS Science Data Catalog (SDC),
To describe calling activity of Pseudacris crucifer in relation to temperature, precipitation, and wetland water levels, we programmed an acoustic recorder (Wildlife Acoustics) to sample seasonal amphibian calls remotely at study site SC4DAI2 in the St. Croix National Scenic Riverway from 2008 to 2012. We programmed the recorder to sample for five minutes at the top of every hour of every day from late winter/early spring through late summer. We used the Songscape option in Songscope software to generate annual summaries of all of our acoustic samples from SC4DAI2. These summaries included a median dB level for each prescribed frequency within each recording. Pseudacris crucifer, the spring peeper, inhabited SC4DAI2...
Our model is a full-annual-cycle population model {hostetler2015full} that tracks groups of bat surviving through four seasons: breeding season/summer, fall migration, non-breeding/winter, and spring migration. Our state variables are groups of bats that use a specific maternity colony/breeding site and hibernaculum/non-breeding site. Bats are also accounted for by life stages (juveniles/first-year breeders versus adults) and seasonal habitats (breeding versus non-breeding) during each year, This leads to four states variable (here depicted in vector notation): the population of juveniles during the non-breeding season, the population of adults during the non-breeding season, the population of juveniles during the...
The sampling locations provided here were selected as a two-stage Generalized Random Tessellation Stratified (GRTS) sample (Stevens & Olsen 2004). The first stage of the GRTS draw used a master sample developed by the North American Bat Monitoring Program (Loeb et al. 2015) from a 10 x 10 km grid placed over the conterminous U.S., Canada, and Mexico. Each 10 x 10 km grid cell (hereafter, master cell) was assigned a GRTS rank by NABat. The rank represents the priority order in which master cells should ideally be sampled. For the second stage of the draw, sampling points within a master cell were selected. Each point was defined as a 30 x 30 m cell of the GIS raster that defined monarch-relevant habitat. Sampling...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Canada,
Long-term monitoring,
Mexico,
Monarch Butterfly,
Sampling design,
Breeding common loons for the movement and foraging pattern study were obtained from lakes in central and northern Minnesota and Wisconsin, and the Upper Peninsula of Michigan. Both adults of a territorial pair were fitted with archival geolocator tags (Model LAT 2500; 34.6 x 8.3 mm, 4.4 g; Lotek Wireless Inc.). A combination of adhesive and plastic cable ties were used to affix the geolocator tag to a modified lock-on aluminum leg band. Tags were programmed to collect daily location estimates for up to two years, tag temperature (0.02o C accuracy, ≤ 0.05o C resolution) at 30-min intervals, and pressure data (±1% accuracy, 0.05% resolution) at 20-sec intervals during daylight hours to document foraging patterns...
Categories: Data;
Tags: Atlantic Ocean along southeastern states,
Gulf of Mexico,
archival geolocator tag,
biota,
common loon,
Breeding common loons were obtained for the movement and foraging pattern study from lakes in central and northern Minnesota and Wisconsin, and the Upper Peninsula of Michigan. Both adults of a territorial pair were fitted with archival geolocator tags (Model LAT 2500; 34.6 x 8.3 mm, 4.4 g; Lotek Wireless Inc.). A combination of adhesive and plastic cable ties were used to affix the geolocator tag to a modified lock-on aluminum leg band. Tags were programmed to collect daily location estimates for up to two years, tag temperature (0.02 oC accuracy, ≤ 0.05 oC resolution) at 30-min intervals, and pressure data (±1% accuracy, 0.05% resolution) at 20-sec intervals during daylight hours to document foraging patterns...
Our model is a full-annual-cycle population model {hostetler2015full} that tracks groups of bat surviving through four seasons: breeding season/summer, fall migration, non-breeding/winter, and spring migration. Our state variables are groups of bats that use a specific maternity colony/breeding site and hibernaculum/non-breeding site. Bats are also accounted for by life stages (juveniles/first-year breeders versus adults) and seasonal habitats (breeding versus non-breeding) during each year, This leads to four states variable (here depicted in vector notation): the population of juveniles during the non-breeding season, the population of adults during the non-breeding season, the population of juveniles during the...
Categories: Data;
Types: Citation,
Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service,
Shapefile;
Tags: Eastern United States,
United States,
bats,
population matrix model,
white nose syndrome
Our model is a full-annual-cycle population model {hostetler2015full} that tracks groups of bat surviving through four seasons: breeding season/summer, fall migration, non-breeding/winter, and spring migration. Our state variables are groups of bats that use a specific maternity colony/breeding site and hibernaculum/non-breeding site. Bats are also accounted for by life stages (juveniles/first-year breeders versus adults) and seasonal habitats (breeding versus non-breeding) during each year, This leads to four states variable (here depicted in vector notation): the population of juveniles during the non-breeding season, the population of adults during the non-breeding season, the population of juveniles during the...
Categories: Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: USGS Science Data Catalog (SDC)
The USGS Upper Midwest Environmental Sciences Center developed a Monarch Relevant Land Cover data set covering the area of Mexico. We used the 2010 land cover data set produced by the tri-national North American Land Change Monitoring System (NALCMS) and supported by the Commission for Environmental Cooperation (CEC) that depicts year 2010 land cover across North America at 30-meter spatial resolution, and incorporated additional spatially-explicit information to develop this land cover map. Additional sources of information included 2004 railroad data provided by Instituto Nacional de Estadística y Geografía and the CEC, 2011 roads data provided by Instituto Nacional de Estadística y Geografía, 2017 protected areas...
The dataset contains sequencing read counts of fish prey eDNA metabarcoding (using primers targeting the 16S rRNA mitochondrial gene) that were extracted from fecal and cloacal swab samples collected from common loons (Gavia immer) captured on the Whitefish Chain of Lakes, Crow Wing County, Minnesota during 2015-2106. Sample type (cloacal or fecal); loon identification, age, and sex; capture date and location; and prey detections for each sample are provided.
The North American Breeding Bird Survey (BBS) (https://www.pwrc.usgs.gov/bbs/) has counted birds annually for over fifty-five years. Survey 'routes' each consist of 50 'stops' (point counts) placed along a route path. Inter-stop distances and stop locations can vary from route to route and from year to year, and precise locations of each stop are not typically recorded. This data set (and the associated R script) includes quantified uncertainty in BBS annual point count locations using digitized estimates of stop locations from the central United States. It also includes the necessary components to calculate the resulting land cover uncertainty for each annual point count (i.e., stop) and facilitates incorporation...
Categories: Data;
Tags: Avian,
Birds,
Breeding Bird Survey (BBS),
Habitat uncertainty,
Informative priors,
A dataset consisting of the documented year of first arrival of Pseudogymnoascus destructans (Pd) at 596 locations across North America was used to fit a Gaussian process model. The model allows prediction of the year of first arrival of Pd at arbitrary locations. The included dataset consists of these predictions which span the North American continent.
Categories: Data,
Data Release - In Progress;
Tags: North America,
bats,
extinction and extirpation,
farming,
statistical analysis,
This code file accompanies a manuscript describing associations of monarch breeding occurrence and abundance with landscape and local characteristics at locations in northern and southern Wisconsin. Context for the study can be obtained from the manuscript (Bruce (nee Harnsberger), A.S., Thogmartin, W.E., Trosen, C., Oberhauser, K., and Gratton, C., In-Press, Landscape- and local- level variables affect monarchs at patches in Midwest grasslands: Landscape Ecology), metadata for covariate information, and comments within the code. Users interested in the specific models examined in the course of this study may run this code with the associated data file, monarch2020_021920.csv. Data associated with code were collected...
This data file is in long format, comprising time series of hunter abundance and behavior and duck abundance. Hunter information varies by administrative flyway (Mississippi and Central), whereas duck population abundance is summarized for both the Prairie Pothole Region and the continent. Duck information for the Prairie Pothole Region is for the U.S. portion only (Strata 41-49 of the May waterfowl survey) and for 12 duck species, mallard, American wigeon, blue-winged teal, canvasback, gadwall, lesser and greater scaup, green-winged teal, northern pintail, northern shoveler, redhead, ring-necked duck, and ruddy duck.
Categories: Data;
Tags: North America,
Prairie Pothole Region,
USGS Science Data Catalog (SDC),
Wildlife Biology,
biota,
The concentrations of selected metals (mercury [Hg], lead, cadmium, selenium [Se], and aluminum) were determined in common loon (Gavia immer) blood samples collected from across a broad area of Minnesota. The observed pattern of loon Hg exposure was related to Hg concentrations in a standardized 12-cm whole organism yellow perch (Perca flavescens), based on fish Hg records from lakes throughout Minnesota, using the U.S. Geological Survey National Descriptive Model for Mercury in Fish.
The Deepwater Horizon oil spill caused extensive injury to natural resources in the Gulf of Mexico, and Gavia immer (common loon) were negatively affected from the spill. The Open Ocean Trustee Implementation Group funded the project Restoration of Common Loons in Minnesota to restore common loons lost to the spill. In 2020–21, study lakes in an eight-county region in north-central Minnesota were identified to focus project activities. In 2023 surveys were conducted on these lakes to monitor common loon territory occupancy, nest success, and chick survival. This dataset includes a summary of total number of artificial nesting platforms (ANP), total number of ANP and natural nests, ANP and natural nest success, total...
Categories: Data;
Tags: Artificial Nest Platform,
Common Loon,
Deepwater Horizon Oil Spill,
Gavia immer,
Loon Productivity,
Data are population size estimates for monarch butterflies overwintering in Mexico as well as 76 potential stressors and 3 correlates. These stressors include disease, pesticide, herbicide, temperature, precipitation, and habitat loss measured for Mexican overwintering area and Southern, North Central, and Northeastern breeding areas.
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Eastern North America,
Extreme weather,
Forest loss,
Monarch butterfly,
USGS Science Data Catalog (SDC),
The dataset is comprised of historical observations and predictions of winter colony counts at known sites for three bat species (Myotis lucifugus, Myotis septentrionalis, and Perimyotis subflavus). Predictions of abundance are made at each site for each year from 1990 to 2020. Predictions come from three models, including a piecewise constant interpolation model, and two variations of a log linear mixed effects model. These predictions were used in part to inform the SSA for the three bat species. The log linear mixed models regress log(count+1) on one predictor, the year since detection of Pseudogymnoascus destructans (Pd), giving estimates of the population rate of growth (trend) for each site. Flexibility for...
Categories: Data,
Data Release - In Progress;
Tags: North America,
bats,
demography,
extinction and extirpation,
farming,
The dataset is comprised of site-level, regional-level, and species-level future population projections for three bat species (Myotis lucifugus, Myotis septentrionalis, and Perimyotis subflavus) under several future scenarios. Future scenarios can be used to assess population health, and were used in part to inform the SSA for the three bat species. Many different future scenarios are included, defined based on future wind development and white-nose syndrome impacts. Sheets within the table are labeled based on the spatial scale of the projections (species, regional, or site-level), and the scenario column in each sheet indicates which future scenario projections correspond to, labeled based on the severity of wind...
Categories: Data,
Data Release - In Progress;
Tags: North America,
bats,
demography,
extinction and extirpation,
farming,
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