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These data represent trapping effort and captures of deer mice at Point Reyes National Seashore, Marin County, California. Deer mice were captured and marked with ear tags to allow identification of individuals. The location of captures can be used in a spatially explicit capture recapture model to estimate density of mice and how mouse density varies by site and habitat type.
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Intracoelomic implantation of electronic tags has become a common method in fishery research, but rarely are fish examined by scientists after release to understand the extent that surgical incisions have healed. Walleye (Sander vitreus) are a valuable, highly-exploited fishery resource in the Laurentian Great Lakes. Here, fishery capture of walleye with internal acoustic transmitters combined with a high reward program provided multiple opportunities to examine photographs and quantify the status of surgical incisions. Walleye (n=926) from reef and river spawning populations in Lake Erie and Lake Huron were implanted with acoustic transmitters during spring spawning events from 2011 to 2016. Incisions were closed...
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The data herein are geochemical (from X-Ray fluorescence spectrometry), grain size (percent clay, silt, sand), lithological (loss on ignition data), bathymetric, reconstructed IVT, and radioactive isotopes (14-C, 210-Pb, 226-Ra, and 137-Cs). These data were collected from sediments from Leonard Lake, Mendocino County, California, USA starting in 2014. Together, these data provide evidence for a record of extreme precipitation going back three millennia, showing regional pluvial and drought cycles.
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To determine if invasive annual grasses increased around energy developments after the construction phase, we calculated an invasives index using Landsat TM and ETM+ imagery for a 34-year time period (1985-2018) and assessed trends for 1,755 wind turbines (from the U.S. Wind Turbine Database) installed between 1988 and 2013 in the southern California desert. The index uses the maximum normalized difference vegetation index (NDVI) for early season greenness (January-June), and mean NDVI (July-October) for the later dry season. We estimated the relative cover of invasive annuals each year at turbine locations and control sites and tested for changes before and after each turbine was installed. These data were used...
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Data are included for field surveys conducted for freshwater mussels within the Pine Creek watershed in the Mid-Atlantic region of the United States. Timed search (qualitative) surveys were conducted in ~200 meter sections of river between 1995 and 2009; The number of mussels of each species and associated search time were recorded for each survey section to determine a catch per unit effort (CPUE; number of individuals found per person hour).
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Proppants used during hydraulic fracturing of oil and gas wells are manufactured to maximize petroleum yield by controlling the size, shape, density, and strength of the proppant material. The most common types of proppants are mined silica sand and manufactured ceramics, some of which are further modified with organic resin coatings to improve performance. Much of the work on the environmental and human health effects of proppant releases into the environment has focused on occupational silicosis, with little attention given to the potential effects from the organic coatings on these materials. This oversight is especially relevant in the context of dumping of unwanted proppant on the land surface, which has been...
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The three datasets were used in a model estimating the current and future persistence of 222 populations of southern hognose snakes, as estimated as part of the USFWS Species Status Assessment. Because these datasets contain information about sensitive species at risk of overcollection and harassment, they do not contain any spatial identifying information. The "HESIM_locs" dataset contains a list of southern hognose snake occurrence records with associated year of observation and population ID. The "SEsnakes_locs" dataset contains a list of non-target snake species occurrence records with associated year of observation and population ID. The "HESIM_pops_all" dataset contains a list of southern hognose snake populations...
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Atmospheric deposition of reactive nitrogen (Nr) due to human activities can have measurable effects on ecosystem processing and export of nutrients, groundwater and surface-water quality. Rates of Nr deposition to lower-elevation forests immediately adjacent to the Denver/Boulder urban area, however, have only recently been measured. The focus of this study was to determine the extent of urban and agricultural N pollution transport to the Colorado Front Range. In conjunction with the Network for Urban Atmospheric Nitrogen Chemistry (NUANC) and the National Atmospheric Deposition Program (NADP), we measured wet-plus-dry Nr deposition and evaluated spatial and seasonal variations in N deposition along an elevational...
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LUCAS-W is a scenario-based simulation model of coupled land use change and associated water demand for California's Central Coast region from 2001-2061. The model is a verison of the LUCAS model, which uses the SyncroSim software framework (Software documentation available at http://doc.syncrosim.com/index.php?title=Reference_Guide), that contains a new coupling with statistical software R (https://www.r-project.org/) to enable dynamic feedbacks between land-use change, resulting water demand, and water availability. The model was parameterized with land-use change and water use empirically estimated from county-scale historic data, as well as results from dozens of local agencies’ groundwater modeling efforts....
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This data release presents results from a laboratory study designed to measure the effect of temperature on denitrification rates in sediments collected from 5- to 30-cm depth below the lake bottom, at a location where groundwater discharges to the lake. Sediment cores were collected June 25, 2014 from the West site (Fishermans Cove) in Ashumet Pond, Cape Cod, MA then shipped to Boulder, CO for laboratory experiments. Groundwater used for these experiments was collected from a well just upgradient of the sediment collection site. Denitrification rates were determined on sediment plus groundwater slurries maintained under anaerobic conditions and employing the acetylene block method. Nitrous oxide concentrations...
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The Climate Adaptation Science Centers (CASCs) partner with natural and cultural resource managers, tribes and indigenous communities, and university researchers to provide science that helps fish, wildlife, ecosystems, and the communities they support adapt to climate change. The CASCs provide managers and stakeholders with information and decision-making tools to respond to the effects of climate change. While each CASC works to address specific research priorities within their respective region, CASCs also collaborate across boundaries to address issues within shared ecosystems, watersheds, and landscapes. These shapefiles represent the 9 CASC regions and the national CASC that comprise the CASC network, highlighting...
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Several Francisella spp. including F. noatunensis are regarded as important emerging pathogens of wild and farmed fish. However, very few studies have investigated the virulence factors that allow these bacterial species to be pathogenic in fish. The Francisella Pathogenicity Island (FPI) is a well-described, gene-dense region encoding major virulence factors for the genus Francisella. PdpA is a member of the pathogenicity determining protein genes encoded by the FPI that are implicated in the ability of the mammalian pathogen, F. tularensis, to escape and replicate in infected host cells. Using a sacB suicide approach, we generated pdpA knockouts to address the role of PdpA as a virulence factor for F. noatunensis....
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The storage and persistence of soil organic matter (SOM) is of critical importance to soil health, and to the terrestrial carbon cycle with implications for long-term climate change. To better understand the spatio-temporal controls on SOM, we have developed a new dataset spanning two previously described marine terrace soil chronosequences from northern, CA, USA: the Santa Cruz and the Mattole River chronosequences. Each of these sites, is comprised of several terraces surfaces that span at least 200 ka of soil development. The sites differ with regard to local precipitation, with the Mattole site receiving nearly double the mean annual precipitation of the Santa Cruz site. During the period from 2011 through 2016,...
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The U.S. Geological Survey provides a wide range of scientific information to an even wider group of stakeholders. Understanding what capacities are needed and if and or where these capacities exist across the USGS landscape is critical in moving science to the next level of use, implementation, and visualization. The concept behind the groups organized to conduct and interpret the survey that collected these data took advantage of the USGS’s position as a science organization with expertise spanning a wide range of science disciplines, stakeholders, and responsibilities. A survey was conducted of USGS employees (Sep 20-Nov 20) to get a current sample of the capacities that exist across the USGS.
Introduction and translocation programs require thoughtful planning to increase the likelihood of success and to understand the benefits, risks, and constraints of such programs. A risk assessment was completed for bull trout introduction into the Sullivan Lake and Harvey Creek watershed, northeastern Washington. The risk assessment was designed to evaluate potential risks to resident fish species, to bull trout introduced into Sullivan Lake, and to bull trout donor source populations. The risk assessment describes the potential risks associated with pathogens, genetics, and ecological interactions. Literature reviews were completed for fish species composition and abundance in Sullivan Lake watershed to assess...
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This dataset represents a summary of potential cropland inundation for the state of California applying high-frequency surface water map composites derived from two satellite remote sensing platforms (Landsat and Moderate Resolution Imaging Spectroradiometer [MODIS]) with high-quality cropland maps generated by the California Department of Water Resources (DWR). Using Google Earth Engine, we examined inundation dynamics in California croplands from 2003 –2020 by intersecting monthly surface water maps (n=216 months) with mapped locations of precipitation amounts, rice, field, truck (which comprises truck, nursery, and berry crops), deciduous (deciduous fruits and nuts), citrus (citrus and subtropical), vineyards,...
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This database is the result of an extensive literature search aimed at identifying documents relevant to the emerging field of dam removal science. In total the database contains 296 citations that contain empirical monitoring information associated with 207 different dam removals across the United States and abroad. Data includes publications through 2020 and supplemented with the U.S. Army Corps of Engineers National Inventory of Dams database, U.S. Geological Survey National Water Information System and aerial photos to estimate locations when coordinates were not provided. Publications were located using the Web of Science, Google Scholar, and Clearinghouse for Dam Removal Information.
This dataset supports a published study on the effects of permafrost thaw on greenhouse gas fluxes and microbial activities at the Alaska Peatland Experiment (APEX), part of the Bonanza Creek LTER, in interior Alaska. The dataset includes autochamber CO2 and CH4 fluxes, net ecosystem exchange, ecosystem respiration, soil temperatures, climate data, microbial qPCR data, soil physical chemistry, soil extract chemistry, and rates of microbial activities, both from lab incubations, and rates derived from an isotope based process model.
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This data set, compiled by USGS Lake Erie Biological Station, provides near-bottom measurements of temperature and dissolved oxygen for the Central Basin of Lake Erie. Data were recorded by self-contained environmental data loggers (PME, Inc., MiniDOT data loggers). The data loggers were deployed during the stratified period (i.e., beginning of June 2020 through late October 2020) to better understand how hypoxia develops and influences fish habitat quality. The data loggers were deployed on acoustic telemetry receivers in a network designed to record tagged fish movements (Great Lakes Acoustic Telemetry Observation System, GLATOS). Additional years of data collection are planned, and data release will be updated...
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Above- and belowground production in coastal wetlands are important contributors to carbon accumulation and ecosystem sustainability. As sea level rises, we can expect shifts to more salt-tolerant communities, which may alter these ecosystem functions and services. Although the direct influence of salinity on species-level primary production has been documented, we lack an understanding of the landscape-level response of coastal wetlands to increasing salinity. What are the indirect effects of sea-level rise, i.e. how does primary production vary across a landscape gradient of increasing salinity that incorporates changes in wetland type? We measured above- and belowground production in four wetland types that span...
map background search result map search result map Maps of the USGS Climate Adaptation Science Centers (May 2024) Primary production across a coastal wetland landscape in Louisiana, U.S.A. (2012-2014) Condition of Surgical Acoustic Tag Incisions in Recaptured Lake Erie Walleye (2011-2016) USGS Dam Removal Science Database v4.0 Southern hognose snake Species Status Assessment data products Data supporting Landsat time series assessment of invasive annual grasses following energy development Determination of the effect of temperature (Q10) on denitrification rates in sediments collected from a groundwater discharge site in Ashumet Pond on Cape Cod, MA Pine Creek freshwater mussel qualitative survey data 1995 through 2009 Soil Biogeochemical Data from a Marine Terrace Soil Climo-Chronosequence Comparison Flux and Soil Data from the Alaska Peatland Experiment 2014 to 2016 Seasonal Atmospheric Nitrate and Ammonium Deposition along an Elevation Gradient in the Colorado Front Range using Ion Exchange Resin Columns (2018-2019) Projections of 5 coupled scenarios of land-use change and groundwater sustainability for California's Central Coast (2001-2061) - LUCAS-W model Disruption of Francisella noatunensis orientalis pdpA gene results in virulence attenuation and protection in zebrafish USGS Earthmap Capacity Assessment Dataset Bottom dissolved oxygen measurements from Lake Erie's Central Basin, 2020 Information tables associated with a risk assessment for bull trout introduction into Sullivan Lake, northeastern, Washington including population donor sources and resident species, April 2021 County-level maps of cropland surface water inundation measured from Landsat and MODIS Chemistry data from leachates of hydraulic fracturing proppants collected from southeastern New Mexico, 2018-2019 Captures and Trapping Effort for Deer Mice (Peromyscus sonoriensis) at Point Reyes National Seashore, California, USA from 2021 to 2022 Geochemical, grain size, lithological, bathymetric, reconstructed integrated vapor transport, and age model data for Leonard Lake, Mendocino County Determination of the effect of temperature (Q10) on denitrification rates in sediments collected from a groundwater discharge site in Ashumet Pond on Cape Cod, MA Information tables associated with a risk assessment for bull trout introduction into Sullivan Lake, northeastern, Washington including population donor sources and resident species, April 2021 Captures and Trapping Effort for Deer Mice (Peromyscus sonoriensis) at Point Reyes National Seashore, California, USA from 2021 to 2022 Seasonal Atmospheric Nitrate and Ammonium Deposition along an Elevation Gradient in the Colorado Front Range using Ion Exchange Resin Columns (2018-2019) Pine Creek freshwater mussel qualitative survey data 1995 through 2009 Flux and Soil Data from the Alaska Peatland Experiment 2014 to 2016 Primary production across a coastal wetland landscape in Louisiana, U.S.A. (2012-2014) Bottom dissolved oxygen measurements from Lake Erie's Central Basin, 2020 Geochemical, grain size, lithological, bathymetric, reconstructed integrated vapor transport, and age model data for Leonard Lake, Mendocino County Condition of Surgical Acoustic Tag Incisions in Recaptured Lake Erie Walleye (2011-2016) Soil Biogeochemical Data from a Marine Terrace Soil Climo-Chronosequence Comparison Projections of 5 coupled scenarios of land-use change and groundwater sustainability for California's Central Coast (2001-2061) - LUCAS-W model Data supporting Landsat time series assessment of invasive annual grasses following energy development Chemistry data from leachates of hydraulic fracturing proppants collected from southeastern New Mexico, 2018-2019 County-level maps of cropland surface water inundation measured from Landsat and MODIS Southern hognose snake Species Status Assessment data products USGS Dam Removal Science Database v4.0 USGS Earthmap Capacity Assessment Dataset Maps of the USGS Climate Adaptation Science Centers (May 2024)