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The effects of North American fungi and bacteria on Phragmites australis leaves 2017-2019, with comparisons to the global Phragmites microbiome The data document the results of several microbe bioassays performed by the USGS on Phragmites australis plants, including those performed on mature leaves, seedlings, and dead leaf tissues exploration of the literature to find accounts of microbes associated with Phragmites worldwide. For the bioassays, we prepared 162 pure cultures isolated from Phragmites plants in North America along the east coast, Florida, the Gulf of Mexico, and the Great Lakes area, 125 of which were from a previous study, and 38 represent new collections. The DNA sequences used to identify the 37 new collections are included. Microbes were isolated from plants collected from 2015-2018. We performed assays using both North American plant... Categories: Data; Tags: Africa, Asia, China, DNA sequencing, Ecology, All tags... Europe, Florida, France, Genetics, Germany, Hong Kong, Indiana, Italy, Japan, Louisiana, Maine, Maryland, Michigan, New Jersey, North America, North Carolina, Ohio, Philippines, Poland, Portugal, Rhode Island, Russia, Spain, USGS Science Data Catalog (SDC), United Kingdom, Virginia, bacteria, biota, flowering plants, fungi, pathology, plant and animal testing, systematics and taxonomy, Fewer tags Hydrogeochemical Mixing data from Lake Michigan Tributaries 2011 This dataset describes the hydrogeomorphic structure and lake-tributary mixing in three intermediate-sized Lake Michigan rivermouths: Ford River, Manitowoc River, and Pere Marquette River. Data were collected from May to October 2011. Water chemistry variables were measured with a multiparameter sonde along longitudinal, lateral, and vertical transects. Magnesium, boron, and stable water isotope concentrations were also determined from grab water samples at particular depths. Categories: Data; Tags: Ford River, Geochemistry, Great Lakes, Hydrology, Lake Michigan, All tags... Manitowoc River, Pere Marquette River, USGS Science Data Catalog (SDC), conservative tracers, deltas, environment, estuaries, estuarine mixing, geomorphology, hydrogeomorphic processes, hydrology, rivermouth, water chemistry, Fewer tags Acoustic backscatter - Data and Python Code These data were compiled for investigating the relationship between acoustic backscattering by riverbeds composed of various riverbed substrates (bed sediment), and for developing and testing a probabilistic model for substrate classification based on high-frequency multibeam acoustic backscatter. The model is described in Buscombe et al. (2017). The data consist of various quantities on coincident grids, from various sites along the Colorado River in Grand Canyon, including water depth, bed roughness, the area (or footprint) of the acoustic beam, unfiltered and filtered backscatter magnitude, sediment classification (for each location, 1 of 5 sediment classes in a categorical scheme), and the probabilities for... Categories: Data; Tags: Arizona, Colorado River, Geography, Geomorphology, Glen Canyon, All tags... Grand Canyon, Information Sciences, Marble Canyon, Remote Sensing, Southwestern United States, USGS Science Data Catalog (SDC), United States, acoustic remote sensing, ecogeomorphology, fluvial geomorphology, fluvial sediment transport, multibeam backscatter, probabilistic modeling, seafloor mapping, stochastic modeling, submerged aquatic vegetation, substrate mapping, Fewer tags Lethality of bloom forming cyanobacteria on zebra and quagga mussel veligers collected from the Detroit River Zebra and quagga mussel veligers were exposed to eleven distinct cultures (isolates) of cyanobacteria representing Anabaena, Aphanizomenon, Dolichospermum, Microcystis, and Planktothrix species and the cyanotoxin microcystin to determine the lethality of cyanobacteria on dreissenid veligers. Six-day laboratory bioassays were performed in microplates using dreissenid veligers collected from the Detroit River, Michigan, USA. Veligers were exposed to increasing concentrations of cyanobacteria and microcystin using the green algae Chlorella minutissima as a control. Raw data were fit to dose response curves formulated from a Probit model to calculate LC50 values. This data release presents the raw data summarized and... Categories: Data; Tags: Aquatic Biology, Belle Isle, Detroit, Detroit River, Ecology, All tags... Environmental Health, Great Lakes, Michigan, USGS Science Data Catalog (SDC), Water Quality, Water Resources, aquatic biology, developmental biology, environment, invasive species, Fewer tags Various Lake Powell data used for predicting smallmouth bass entrainment rates and population growth based on thermal suitability below and downstream of Glen Canyon Dam These data were compiled to create models that estimate entrainment rates and population growth rates of smallmouth bass below Glen Canyon Dam. Objective(s) of our study were to predict smallmouth bass entrainment rates and population growth under different future scenarios of Lake Powell elevations and management. These data represent parameters needed for associated models and data needed to produce figures. These data were collected from publicly available online sources including published papers and federal government datasets. These data were assembled by researchers from U.S. Geological Survey, Utah State University, Colorado State University, U.S. Fish and Wildlife Service. These data can be used to run... Categories: Data; Tags: Aquatic Biology, Arizona, Climatology, Colorado River, Diamond Creek, All tags... Ecology, Geography, Glen Canyon, Glen Canyon Dam, Global Horizon Irradiance, Grand Canyon, Hydrology, Information Sciences, Lake Powell, Lees Ferry, Little Colorado River, Page, Page Airport, USGS Science Data Catalog (SDC), Utah, Williams, adaptive management, age class, air temperature, area, bathymetry, climatologyMeteorologyAtmosphere, data release, depth suitability, ecological processes, elevation, entrainment rates, environment, evaporation, field inventory and monitoring, inflow projections, inlandWaters, mean observed lengths, modeling, observed daily depths, outflow projections, population growth, precipitation (atmospheric), reproduction, reservoir water quality model CEQUAL-W2, smallmouth bass, solar, study areas, surface water (non-marine), surface water quality, temperature profiles, thermal suitability, water depths, water temperature, Fewer tags Impact of suspended sediments/soils to juvenile mussels This data release includes physical and chemical characteristics of field collected sediment and soil samples in Missouri representing potential sediment/soil that may enter the water column during construction related activities. Three samples were collected, including Spring River sediment, Osage River bank soil and Columbia crushed limestone. The impacts of increased suspended solid level due to the three samples on early-stage freshwater mussels were examined using three freshwater mussel species, including Fatmucket (Lampsilis siliquoidea), Arkansas Brokenray (Lampsilis reeveiana), and Washboard (Megalonaias nervosa). Specifically, toxicity endpoints including survival, biomass, and growth of juveniles were... Categories: Data; Tags: Acute toxicity, Aquatic Biology, Boone County, Chronic toxicity, Osage River, All tags... Sediment pollution, Spring River, USGS Science Data Catalog (SDC), Water pollution, biota, sediment transport, Fewer tags In vitro expression, immunogenicity, and efficacy data from recombinant raccoon poxvirus-vectored rabies vaccine candidates tested in mice This work is part of an experimental trial to develop and assess novel recombinant raccoonpox virus (RCN) rabies vaccines in the mouse model, for potential use in bats. Briefly, our research group previously developed a recombinant RCN vaccine candidate expressing a mosaic glycoprotein (MoG) gene that protected mice and big brown bats when challenged with rabies virus (RABV). We developed two new recombinant RCN candidates expressing MoG (RCN-tPA-MoG and RCN-SS-TD-MoG) with the aim of improving RCN-MoG. We assessed and compared in vitro expression, in vivo immunogenicity, and protective efficacy in vaccinated mice challenged intracerebrally with RABV. In this data set, we share results of immunofluorescence assay... Categories: Data; Tags: A/J mice, National Wildlife Health Center, Madison, WI, RABV, USGS Science Data Catalog (SDC), University of Wisconsin-Madison, Madison, WI - Hanson Biomedical Sciences, All tags... Wildlife Disease, biota, rabies, rabies virus, raccoon poxvirus, recombinant, vaccine, Fewer tags Zooplankton, Benthos, Mysis, and fish diet data from northern Lake Huron in 2012 These data consist of a multi-trophic, day vs. night, nearshore to offshore transect approach for data collection for this Cooperative Science and Monitoring Initiative effort at two northwestern Lake Huron sites near Hammond Bay and Thunder Bay, Michigan. Zooplankton and Mysis samples were collected monthly from April-October while benthos and prey fish samples were collected seasonally during Spring, Summer, and Fall. Invertebrate taxa (zooplankton, Mysis, benthic macroinvertebrates) were identified, enumerated, and measured using a dissecting microscope. Diet items of the prey fish were processed similarly to the other samples in terms of taxonomy. These data were used to calculate densities of fish prey items... Categories: Data; Tags: Aquatic Biology, Ecology, Geography, Lake Huron, Limnology, All tags... Northwestern Lake Huron, USGS Science Data Catalog (SDC), Zooplankton, aquatic ecosystems, biota, community ecology, environment, fisheries biology, food web, inlandWaters, population and community ecology, Fewer tags Distribution Models Predicting Groundwater Influenced Ecosystems in the Northeastern United States Globally, groundwater dependent ecosystems (GDEs) are increasingly vulnerable to groundwater extraction and land use practices. Groundwater supports these ecosystems by providing inflow, which can maintain water levels, water temperature, and chemistry necessary to sustain the biodiversity that they support. Many aquatic systems receive groundwater as a portion of base flow, and in some systems (e.g., springs, seeps, fens) the connection with groundwater is significant and important to the system’s integrity and persistence. Groundwater management decisions for human use may not consider ecological effects of those actions on GDEs, which rely on groundwater to maintain ecological function. This disconnect between... Categories: Data; Types: Downloadable, GeoTIFF, Map Service, Raster; Tags: Ecology, Hydrology, Land Use Change, New England, Remote Sensing, All tags... USGS Science Data Catalog (SDC), Water Resources, Wildlife Biology, groundwater, groundwater influenced ecosystems, imageryBaseMapsEarthCover, modeling, northeastern United States, northeastern states, prediction, Fewer tags White-tailed deer and sharp-tailed grouse data used in constrained generalized additive models to enhance survival analyses and incorporate ecological theory Grouse: These data on sharp-tailed grouse survival times are provided for individuals wanting to run an age-period survival analysis. Entry and exit times are expressed in integer days from the start of the study. Entry age and exit age expressed in integer days are also included. Data are structured to implement survival analysis. White-tailed Deer: These data on white-tailed deer survival times are provided for individuals wanting to run an age-period survival analysis. Entry and exit times are expressed in integer weeks from the start of the study. Entry age and exit age expressed in integer weeks are also included. Data are structured to implement survival analysis. Only adult female individuals that were chronic-wasting... Categories: Data; Tags: USGS Science Data Catalog (SDC), Wildlife Biology, Wisconsin, utilitiesCommunication Data used to test a video monitoring and computational system for estimating juvenile fish abundance We developed and tested neural network-based models to recognize and count emigrating juvenile river herring in continuous video. Continuous video was collected from an underwater camera installed at Great Herring Pond in Bourne, Massachusetts (USA) between June and November 2017. Our algorithm extracts video frames to assess presence/absence of fish and count numbers of fish emigrating. We used extracted video frames to assess model performance. Provided datasets include information about extracted frames that were used for model assessment. This data release includes four datasets that were used to test model performance and select the best fitting model. (1) The “Model Evaluation Dataset” includes count and presence/absence... Categories: Data; Tags: Ecology, New England, Massachusetts, Cape Cod, USGS Science Data Catalog (SDC), biota Data on dietary preference by brown treesnakes on Guam These data address experimental evaluations of dietary preference by captive brown treesnakes on Guam. Snakes were collected from the wild in areas with birds present and in areas without birds present 2018–2019. Snakes were then run through preference trials during which they were offered first live lures (mouse and finch) in snake traps on opposite sides of the arena. On the second night, snakes were offered dead carrion (baits) of each prey type (mouse, chicken chick) equal to 30% of their mass. Choices were monitored overnight using game cameras and then transcribed the following day. Individuals were classified as BIRD or NOBIRD snakes based on whether they had birds in their gut contents at the time of capture.... Categories: Data; Tags: Ecology, Guam, Guam National Wildlife Refuge, Preference, USGS Science Data Catalog (SDC), All tags... environment, Fewer tags Hawaii Volcanoes National Park Plant Trait, Percent Cover, and Environmental Data 2014 This data release includes data and metadata on 1) the coverage and composition of plants 2) species specific plant traits 3) sampling locations and 4) environmental data. All sites were within Hawaii Volcanoes National Park on Hawaii Island. Plant cover data were obtained from National Park Service Inventory and Monitoring Program. Plant trait data was collected for these plots in 2014. This study aims to evaluate how traits of native and exotic plant species change along environmental gradients and what this suggests for plant competition and invasion. Categories: Data; Tags: Ecology, Hawaii, Hawaii Volcanoes National Park, USGS Science Data Catalog (SDC), botany, All tags... bryophyte, ecology, forest resources, forest restoration, invasive species, plant ecology, seedling recruitment, tropical forest dynamics, Fewer tags Freshwater Introduction South of Highway 82 (ME-16): 2018 land-water classification The Louisiana State Legislature created the Coastal Wetlands Planning, Protection and Restoration Act (CWPPRA) in order to conserve, restore, create and enhance Louisiana's coastal wetlands. The wetland restoration plans developed pursuant to these acts specifically require an evaluation of the effectiveness of each coastal wetlands restoration project in achieving long-term solutions to arresting coastal wetlands loss. This data set includes mosaicked aerial photographs for the Freshwater Introduction South of Highway 82 (ME-16) project for 2018. This data is used as a basemap land-water classification. It also serves as a visual tool for project managers to help them identify any obvious problems or land loss... Categories: Data; Types: Downloadable, GeoTIFF, Map Service, Raster; Tags: CWPPRA, Ecology, Geography, Geography, Gulf of Mexico, All tags... Land Use Change, Land Use Change, Louisiana, Louisiana Coastal, ME-16, Remote Sensing, Remote Sensing, USGS Science Data Catalog (SDC), aerial photography, conservation, digital elevation models, ecosystem monitoring, geographic information systems, image collections, image mosaics, remote sensing, wetland ecosystems, wetland restoration, Fewer tags Oyster Bayou Marsh Creation and Terracing (CS-59): 2018 land-water classification The Louisiana State Legislature created the Coastal Wetlands Planning, Protection and Restoration Act (CWPPRA) in order to conserve, restore, create and enhance Louisiana's coastal wetlands. The wetland restoration plans developed pursuant to these acts specifically require an evaluation of the effectiveness of each coastal wetlands restoration project in achieving long-term solutions to arresting coastal wetlands loss. This data set includes mosaicked aerial photographs for the Oyster Bayou Marsh Creation and Terracing (CS-59) project for 2018. This data is used as a basemap land-water classification. It also serves as a visual tool for project managers to help them identify any obvious problems or land loss within... Categories: Data; Types: Downloadable, GeoTIFF, Map Service, Raster; Tags: CS-59, CWPPRA, Geography, Gulf of Mexico, Land Use Change, All tags... Louisiana, Louisiana Coastal, Remote Sensing, USGS Science Data Catalog (SDC), aerial photography, conservation, digital elevation models, ecosystem monitoring, geographic information systems, image collections, image mosaics, remote sensing, wetland ecosystems, wetland restoration, Fewer tags The North American Freshwater Migratory Fish Database (NAFMFD): Characterizing the migratory life histories of freshwater fishes of Canada, the United States, and Mexico We developed the North American Freshwater Migratory Fish Database (NAFMFD) that synthesizes current knowledge of migratory status, pattern, and behavior for native and non-native freshwater fish species throughout North America, including 1,241 species representing 79 families and 322 genera. Categories: Data; Tags: Aquatic Biology, Ecology, Ecology, USGS Science Data Catalog (SDC), farming, All tags... fish, inlandWaters, migratory species, Fewer tags February 2020 National Wetlands Inventory, Mississippi Barrier Islands Habitat Classification: (Cat Island, Ship Island, Petit Bois Island and Horn Island) This data set consists of digital data describing wetlands and uplands habitats for the Mississippi Coastal Improvements Program (MsCIP) area, consisting of Cat, Ship, Horn and Petit Bois Islands for the year 2020. Wetlands were classified using the Cowardin, et al., wetlands classification scheme to the level of freshwater and tidal, salinity modifiers. Uplands were classified using a customized classification scheme which can be cross-referenced to Anderson, et. al. For this dataset, upland dunes were delineated as areas at or above 1.524 meters (5 feet) as determined in the Lidar data that was referenced without modification for this classification. With this elevation criteria some delineated upland dune features... Categories: Data; Types: Downloadable, Map Service, OGC WFS Layer, OGC WMS Layer, Shapefile; Tags: Cat Island, Geography, Habitats, Horn Island, Land Use Change, All tags... Land Use Change, Mississippi Barrier Islands, Mississippi Coastal Improvements Program (MSCIP), National Wetlands Inventory, National Wetlands Inventory (NWI), Petit Bois Island, Remote Sensing, Remote Sensing, Ship Island, USGS Science Data Catalog (SDC), Wetland ecosystems, avian resources, biota, coastal ecosystems, environment, habitat analysis, habitat monitoring, marine, terrestrial, turtle resources, wetland restoration, Fewer tags Topographic and bathymetry survey (2019) along the Chincoteague Living Shoreline, Virginia This dataset contains field topographic and bathymetric data measured during February to April 2019 across oyster castles and mud flats along the Chincoteague Living Shoreline, Virginia, where constructed oyster reefs (CORs, aka oyster castles) were installed to protect the shoreline and enhance habitat for oyster and other species. Categories: Data; Tags: Chincoteague, Geomorphology, Shoreline, USGS Science Data Catalog (SDC), United States, All tags... Virginia, elevation, oceans, Fewer tags Topo-bathymetric survey at Gandys Beach, New Jersey, 2018 This Data Release contains field topo-bathymetric survey data in a selected saltmarsh shoreline along Gandys Beach, New Jersey, where constructed oyster reefs (CORs, aka oyster castles) were installed to protect the shoreline and enhance habitat for oyster and other species. Oyster castles were constructed as a part of a living shoreline project along Gandys Beach in 2016 in response to the damage by Hurricane Sandy in 2012. Wave, current and sediment data were collected, and field topographic and bathymetric surveys were conducted from January 2018 to April 2018. Fine resolution topographic and bathymetric data is needed to assess shoreline structure effectiveness in terms of wave and current energy reduction,... Categories: Data; Tags: Aquatic Biology, Climatology, Climatology, Ecology, Ecology, All tags... Environmental Health, Environmental Health, Gandys Beach, Hydrology, Hydrology, New Jersey, Sedimentology, Sedimentology, USGS Science Data Catalog (SDC), United States, coastal ecosystems, Fewer tags Data from: Decision science as a framework for combining geomorphological and ecological modeling for the management of coastal systems Coastal management decisions are complex and include challenging tradeoffs. Decision science offers a useful framework to address such complex problems. We illustrate the process with several coastal restoration studies. Our capstone example is based on a recent barrier island restoration assessment project at Dauphin Island, Alabama, which included the development of geomorphological and ecological models that forecast environmental changes over a 10 year time period from 2015 to 2025. The proposed framework aims to serve as a tool to assist coastal managers with the process of restoration. Specifically, we discuss the importance of considering concepts and techniques from ecology, coastal geology, geomorphology,... Categories: Data; Tags: Adaptive Management, Aquatic Biology, Barrier Island, Climatology, Dauphin Island, Alabama, All tags... Ecology, Environmental Health, Geography, Geomorphology, Geomorphology, Hydrology, Interdisciplinary Science, Land Use Change, Marine Geology, Restoration, Structured Decision Making, USGS Science Data Catalog (SDC), biota, Fewer tags 1 2 3 4 5 ... »