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These data contain the supplementary results corresponding with the journal article: Using mobile acoustic monitoring and false-positive N-mixture models to estimate bat abundance and population trends by Udell et al. (2024) in Ecological Monographs. These results contain the findings from the North American Bat Monitoring Program's (NABat) "Summer Abundance Status and Trends" analyses which used mobile transect acoustic data for three species (tricolored bat, little brown bat, and big brown bat). Data from the entire summer season (May 1–Aug 31) were used in the modeling process. Here, tabular data for each species include predictions (with uncertainty) of relative abundance (and trends over time) in the summer...
Categories: Data;
Tags: Abundance,
Ecology,
North America,
Relative abundance,
Species distribution model,
The Aga, also known as the Mariana Crow, is an endangered endemic crow of the Northern Mariana Islands, a Commonwealth of the United States of America. The only known population currently extant is on the island of Rota and has been in decline over the past two decades. Unknown pathogens are among the factors that may be contributing to this decline. To support metagenomic and transcriptomic analysis of potential disease agents, a reference genome was generated and gene features comprehensively annotated. The methods used and data availability are described. This data release consists of: 1. Gene annotations for the endangered Aga or Mariana Crow, including summary statistics, that are available from the National...
Characterizing genetic structure across a species’ range is relevant for management and conservation as it can be used to define population boundaries and quantify connectivity. Here, we characterized population structure and estimated effective migration in Greater Sage-grouse (Centrocercus urophasianus). Our objectives were to (1) describe large-scale patterns of population genetic structure and gene flow and (2) to characterize genetic subpopulation centers across the range of Greater Sage-grouse. Samples from 2,134 individuals were genotyped at 15 microsatellite loci. Using standard STRUCTURE and spatial principal components analyses, we found evidence for four or six areas of large-scale genetic differentiation...
Categories: Data,
Data Release - Revised;
Tags: Genetics,
Subpopulation Center,
USGS Science Data Catalog (SDC),
Western North America,
biota
Data were collected in 2017 by researchers at the USGS, USDA-ARS, and University of Wyoming on the food webs of plants, prairie dogs, arthropods, and birds in the Thunder Basin National Grassland. Data were collected from 87 sites in order to parameterize a structural equation model linking prairie dog impacts to changes in vegetation, arthropods, and birds. Abiotic information such as topographic wetness index, terrain roughness, and soil characteristics were estimated at the same set of plots in order to account for abiotic variation across the landscape.
Categories: Data;
Tags: Botany,
Ecology,
Thunder Basin,
Thunder Basin,
Thunder Basin National Grassland,
This data release comprises a dataset that contains sample collection information and microsatellite genotypes, and another dataset that contains single nucleotide polymorphism (SNP) genotypes with sample collection information for populations of white-tailed ptarmigan across the species' range. There is also an additional file (accession numbers.xlsx) linking samples to accession numbers in Genbank. This data was collected in order to address the following: The delineation of intraspecific units that are evolutionarily and demographically distinct is an important step in the development of species-specific management plans. Neutral genetic variation has served as the primary data source for delineating units for...
The data release details the samples, methods, and raw data used to generate high-quality genome assemblies for greater sage-grouse (Centrocercus urophasianus), white-tailed ptarmigan (Lagopus leucura), and trumpeter swan (Cygnus buccinator). The raw data have been deposited in the Sequence Read Archive (SRA) of the National Center for Biotechnology Information (NCBI), the authoritative repository for public biological sequence data, and are not included in this data release. Instead, the accessions that link to those data via the NCBI portal (www.ncbi.nlm.nih.gov) are provided herein. The release consists of a single file, sample.metadata.txt, which maps NCBI accessions to the samples sequenced and the different...
This data set includes the relative production scenarios for eight (8) grass species based on linear models from Epstein, et al. (1998). We selected two indicator species for each community: shortgrass prairie: blue grama (Bouteloua gracilis; BOGR) and buffalo grass (Bouteloua dactyloides; BODA); mixedgrass prairie: sideoats grama (Bouteloua curtipendula; BOCU) and little bluestem (Schizachyrium scoparium; SCSC); tallgrass prairie: big bluestem (Andropogon gerardii; ANGE) and Indiangrass (Sorghastrum nutans; SONU); and semiarid grasslands: black grama (Bouteloua eriopoda; BOER) and tobosagrass (Pleuraphis mutica; PLMU). Soil texture (percent by weight) came from the Earth Systems Science Center (2008) which provided...
Data were collected on plant abundance in Illinois with the goal of determining correlations between the abundance of dominant plant taxa and other plant species.
Categories: Data;
Tags: Illinois,
Illinois,
USGS Science Data Catalog (SDC),
abundance impact curve,
biota,
This study uses growth in vegetation during the monsoon season measured from LANDSAT imagery as a proxy for measured rainfall. NDVI values from 26 years of pre- and post-monsoon season Landsat imagery were derived across Yuma Proving Ground (YPG) in southwestern Arizona, USA. The LANDSAT imagery (1986-2011) was downloaded from USGS’s GlobeVis website (http://glovis.usgs.gov/). Change in NDVI was calculated within a set of 2,843 Riparian Area Polygons (RAPs) up to 1 km in length defined in ESRI ArcMap 10.2.
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Arizona,
Landsat TM,
NDVI,
Normalized Difference Vegetation Index,
Sonoran Desert,
These data have been collected as part of a cooperative project in between the U.S. Geological Survey, Colorado Springs Utilities, and Colorado Springs City Engineering. This project began in 2005 and has collected macroinvertebrate samples from Fountain Creek and its tributaries to monitor the biological condition of this watershed. Provided in this data release are Multimetric Index (MMI) values of aquatic macroinvertebrate assemblages using four different sampling methods. There are two subsets of these data included: (1) MMI values of macroinvertebrate data collected from 2010 to 2012 at 15 sites as part of an invertebrate sample method comparison Scientific Investigations Report (SIR) titled “Comparability...
A dataset of caterpillar performance in an experiment manipulating mean and variance of xanthotoxin levels in diet. Caterpillar growth, development time, and egg production of mated females is presented. Data were collected by all authors in 2017 in a laboratory at Colorado State University, Fort Collins, CO.
Categories: Data;
Tags: Trichoplusia ni,
USGS Science Data Catalog (SDC),
biota,
caterpillar,
growth chamber study,
Wildfires are increasing in size and severity because of a warming climate in combination with overstocked forests. Fire increases the likelihood of debris flows, posing significant threats to life, property, and water supplies. Post-fire debris flows are a substantial, increasing hazard in the Santa Fe Municipal Watershed and other similar forested watersheds across the western United States. The Santa Fe Municipal Watershed in northern New Mexico is of vital importance to the water supply for the city of Santa Fe. We conducted a debris-flow hazard assessment for the Santa Fe Municipal Watershed (SFMW) in north-central New Mexico. We modeled post-fire debris flow probability and volume in 103 sub-basins for 2-year,...
Habitat restoration efforts to conserve wildlife species are often conducted along a range of local site conditions, with limited information available to gauge relative outcomes for habitat suitability among sites and identify those that may lead to the greatest returns on restoration investment. We leveraged existing resource selection function models to generate heatmaps of spatially varying habitat suitability improvement potential for the Gunnison Sage-grouse (Centrocercus minimus) based on a suite of habitat restoration actions deployed across crucial habitats within six remaining satellite populations. We first simulated expected change in model covariates (habitat features) from a suite of restoration actions...
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