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Field data for fishes sampled using mid-water trawls, otter trawls, and the SmeltCam during day and night in San Pablo Bay, CA. This data release includes all measured environmental parameters and fish taxa included in the analysis.
Categories: Data,
Data Release - Revised;
Tags: Aquatic Biology,
California,
Fish Ecology,
Longfin Smelt,
San Francisco Bay-Delta,
This data set includes taxonomic data for zooplankton, larval fish, and phytoplankton sampled in Little Holland Tract and Liberty Island Conservation Bank, in the northern Sacramento-San Joaquin River Delta, California. Zooplankton and larval fish were collected with target specific trawl nets and phytoplankton was collected from water grabs. This data release includes all measured environmental parameters.
Fish tissue from 203 samples collected at five locations in the Niagara River Area of Concern in 2018 were analyzed for a wide range of analytes including Polychlorinated Biphenyls (PCBs), pesticides (E1 and E2), polycyclic aromatic hydrocarbons (PAH), organochlorine and other persistent organic compounds, metals, lipid and moisture. Over 230 analytes were analyzed in the tissue samples, including 160 PCB congeners. Fish tissues from a subset of the sites (n=40) were also analyzed for Dioxins and Furans. The data set includes a variety of laboratory quality assurance data including sample replicates, laboratory blank data, laboratory spike data, matrix spike recoveries, and replicate matrix spike recoveries.
Categories: Data;
Tags: Aquatic Biology,
Aquatic Community Health,
Contaminants, Organic,
Contamination and pollution,
Dioxins,
Macroinvertebrate samples were collected from streams tributary to Honnedaga Lake and from the Middle Branch of the Black River during 2012-2016 and analyzed for methylmercury concentrations and for stable isotope ratios of nitrogen and carbon. Macroinvertebrates were identified in the field, and the level of taxonomic resolution varied from order to species; most taxa were identified to the family level. Specimens were field-processed into composite samples, field-frozen, and submitted to the mercury laboratory for freeze-drying and analysis. Subsamples were then submitted to the stable isotope laboratory for analysis of nitrogen and carbon isotope ratios. This database contains the resulting data and associated...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Ambient Monitoring,
Aquatic Biology,
Aquatic Community Health,
Ecosystem Health,
Environmental Health,
Interest in the field of environmental DNA (eDNA) is growing rapidly and eDNA surveys are becoming an important consideration for aquatic resource managers dealing with invasive species. However, in order for eDNA monitoring to mature as a research and management tool, there are several critical knowledge gaps that must be filled. One such gap is the fate of eDNA materials in the aquatic environment. Understanding the environmental factors that influence the decay of eDNA and how these factors impact detection probabilities over time and space could have significant implications for eDNA survey design and data interpretation. Here we experimentally explore eDNA decay in waste materials and reproductive cells obtained...
Categories: Data;
Types: Citation;
Tags: Aquatic Biology,
Ecology,
Environmental Health,
Genetics,
Missouri,
Data from metabarcoding assays to detect a suite of mussel species using mitochondrial DNA regions of the cytochrome c oxidase subunit I (COI) and NADH dehydrogenase subunit (ND1) genes sequences.
Data describe a designed environmental DNA (eDNA) survey for the detection of longnose darter (Percina nasuta) in field collected water samples. Parameters described include the limit of detection and limit of quantification of the assay; a list of freshwater fish species tissue samples that were used to test specificity of the assay; and field collected water samples that were tested to detect the presence of longnose darter DNA. Samples were collected from sites on the St. Francis river, Missouri in 2018.
Data consist of genotypes for pallid sturgeon and paddlefish broodstock and artificially-produced larvae at 19 sturgeon microsatellite loci and four paddlefish loci. Microsatellite genotypes allowed confirmation of homozygous sturgeon DNA and absence of paddlefish DNA in haploid gynogens. Data also consist of DNA yield estimates for haploid gynogens for proof of concept that haploid gynogens can provide sufficient DNA quantity for restriction site-associated DNA sequencing studies.
Text files containing data regarding attributes of lake trout egg thiamine concentrations from sites in lakes Huron and Michigan collected during 2019-20, sampling site locations and quality assurance quality control values for comparison to previous years (2017-18) lake trout egg thiamine concentrations.
Diploid and triploid Grass Carp (Ctenopharyngodon Idella) tagged with acoustic transmitters were observed in Truman Reservoir, Missouri from February 2017 to March 2019 to determine habitat usage in winter. Habitat parameters were measured at used and available sites to model habitat preference. In addition, tagged fish were targeted during removal attempts to determine the efficacy of using tagged Judas Grass Carp in removing wild conspecifics. This dataset includes information on tagged Grass Carp and habitats they selected as well as capture events and characteristics of the wild fish caught during these attempts.
Assessing the distribution and abundance of both predator and prey (forage) fish species is a cornerstone of ecosystem-based fishery management, and supports decision making that considers food-web interactions. In support of binational Great Lakes fishery management the objectives of this survey were to: provide estimates of densities of key forage and predator species in the western basin of Lake Erie, to assess seasonal and spatial distributions of fishes in tandem with water quality information, and to assess year class strength. A systematic grid sampling approach with 41 stations was sampled via bottom trawl during June (Spring) and September (Autumn), starting in 2013. This data release adds 2021 data to...
Categories: Data;
Tags: Aquatic Biology,
Biota,
Bottom trawl survey,
Ecology,
Freshwater ecosystems,
Hydroacoustic estimates of fish density are used for fisheries management in central Lake Erie. Data are sometimes collected from multiple vessels, raising the question of comparability of data collected among vessels. Hydroacoustic data were collected along three cross-lake transects in central Lake Erie in July, 2014 from three different vessels using similar equipment. Several variables derived from hydroacoustic data and fish densities calculated from those variables were compared between the standard vessel used typically for hydroacoustic data collection and two other vessels used occasionally. The data used in those analyses are presented here.
Categories: Data;
Tags: Aquatic Biology,
Great Lakes,
Lake Erie,
Remote Sensing,
USGS Science Data Catalog (SDC),
These data were compiled as part of a larger study to evaluate post-stocking survival of hatchery-reared Roundtail Chub. We conducted a two year study (Dec. 2015 – Mar. 2017) in the upper Verde River at the Burnt Ranch stocking location near Paulden, Arizona. Young of year Roundtail Chub were acquired from the Arizona Research and Conservation Center in Cornville, Arizona. Passive integrated transponder (PIT) tags (BioMark, 12.5 mm 134.2 kHz FDX) were implanted into Roundtail Chub each year (n = 333, Year 1; n = 2177, Year 2) prior to stocking. Each year, fish were measured (total length, TL, mm) before release (reflected in Pre-Stocking data table). We used two methods to recapture stocked fish, one passive and...
Annotated bibliography of grazing effects on amphibians and their habitats (ver. 2.0, February 2022)
This database contains literature citations and associated summaries pertaining to livestock grazing effects on amphibians and their habitats, with an emphasis on the Oregon spotted frog (Rana pretiosa) and other listed/sensitive wetland-breeding amphibians in the western United States. This is not meant to be an exhaustive list, nor did we perform a systematic meta-analysis; rather, literature records were included based on topical relevance. *HINT: If you are looking for the database SEARCH TOOL, scroll down to 'Attached Files' and download 'Annotated_bibliography_with_search_tool.accdb.' Open the database file to enter the search form.* This data release supersedes Rowe, J.C., Pearl, C.A., Adams, M.J., and McCreary,...
Categories: Data;
Tags: Aquatic Biology,
Ecology,
Land Use Change,
USGS Science Data Catalog (SDC),
Wildlife Biology,
OBIS-USA brings together marine biological occurrence data – recorded observations of identifiable marine species at a known time and place, collected primarily from U.S. Waters or with U.S. funding. Coordinated by the Science Analytics and Synthesis (SAS) Program of the United States Geological Survey (USGS), OBIS-USA, strives to meet national data integration and dissemination needs for marine data about organisms and ecosystems. OBIS-USA is part of an international data sharing network (Ocean Biodiversity Information System, OBIS) coordinated by the Intergovernmental Oceanographic Commission, of UNESCO (United Nations Educational, Science and Cultural Organization) International Oceanographic Data and Information...
These data were collected from the TOPGUN-SODA10 2AK core collected in 2010 by LacCore (University of Minnesota), the USGS. and the University of California (U.C.) Berkeley. The 8.9 meter length core had stable isotopes of oxygen and carbon sampled every 10 millimeters or so, and diatoms samples at every 50 millimeters to 200 millimeters depending on the depth in the core. mineralogic data were collected using X-ray diffraction and grain-size analysis were done at various depths. These data are used to interpret the Holocene and late Pleistocene hydrology and paleoclimate of the lake and the region. The interpretation can be found in: Rosen, M.R., Reidy, L., Starratt, S., Zimmerman, S., in review, Middle Holocene...
Categories: Data;
Tags: Aquatic Biology,
Big Soda Lake,
Central Nevada Desert Basins,
Climatology,
Diatoms,
These data were compiled for an outreach article published in the Boatman's Quarterly Review, which is a magazine published by Grand Canyon River Guides Association. The objectives of our study was to describe the outcomes of the 2018-2020 Bug Flows experiment to a general audience. These data represent 10 years (2012-2021) of invertebrate data and 100 years (1921-2021) of flow data. These data were collected from the Colorado River in Glen Canyon National Recreation Area and Grand Canyon National Park. These data were collected by recreational river runners through a community science effort where we provided river runners with light trapping equipment to sample emergent aquatic insects each night of their expeditions....
These datasets contain aquatic macroinvertebrate and water quality data collected from 159 wetlands in Montana and North Dakota within the Prairie Pothole Region of the Williston Basin.
Survival, behavior, reproduction, morphometric measurements, and tissue analyses of crayfish, mussels, and fish from acute toxicity tests with pyrethroid pesticides. Exposure and recovery water quality data are also included for quality assurance purposes.
These data are a compilation of fishway structures collected by the Atlantic States Marine Fisheries Commission state representatives at the request of the U.S. Geological Survey. The variables included within this dataset range from locality information and structure metadata (eg. latitude/longitude and year of construction) to metrics specifically about the fishway structure (eg. fishway width). The dataset ranges in dates of construction from 1882 to 2020 and includes fishways from all states on the eastern coast of the United States. Requests were sent to the Atlantic States Marine Fisheries Commission state representatives to collect fishway data from the areas within their responsibility. The state representatives...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Aquatic Biology,
Ecology,
Ecology,
USGS Science Data Catalog (SDC)
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