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  4. Data on the detection of Epioblasma capsaeformis using a designed environmental DNA (eDNA) survey upstream and downstream of known populations in the Clinch River, Tennessee (2019 to 2021)

Data on the detection of Epioblasma capsaeformis using a designed environmental DNA (eDNA) survey upstream and downstream of known populations in the Clinch River, Tennessee (2019 to 2021)

Dates

Publication Date
Start Date
2019-09-24
End Date
2022-05-13

Citation

Ruiz-Ramos, D.V., Thompson, N.L., Richter, C.A., and Klymus, K.E., 2023, Data on the detection of Epioblasma capsaeformis using a designed environmental DNA (eDNA) survey upstream and downstream of known populations in the Clinch River, Tennessee (2019 to 2021): U.S. Geological Survey data release, https://doi.org/10.5066/P9IBBTSE.

Summary

Data describe a designed environmental DNA (eDNA) survey for the detection of oyster mussel (Epioblasma capsaeformis) from field collected water samples. Parameters described include the limit of detection and limit of quantification of the assay; a list of freshwater mussel species tissue samples that were used to test specificity of the assay; and field collected water samples that were tested to detect the presence of oyster mussel DNA. Samples were collected from sites on the Clinch River, Tennessee from 2019 to 2021

Contacts

Point of Contact :
Dannise V Ruiz Ramos
Originator :
Dannise V Ruiz Ramos, Nathan L Thompson, Cathy A Richter, Katy E Klymus
Metadata Contact :
CERC Data Managers
Publisher :
U.S. Geological Survey
Data Owner :
Columbia Environmental Research Center
Distributor :
U.S. Geological Survey - ScienceBase
SDC Data Owner :
Columbia Environmental Research Center
USGS Mission Area :
Ecosystems

Attached Files

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Detection_of_Epioblasma_capsaeformis_eDNA_Metadata_20231018.xml
Original FGDC Metadata
View 		55.64 KB application/fgdc+xml
Ecap_eDNA_QA.csv 60.53 KB text/csv
Ecap_eDNA_Samples.csv 216.87 KB text/csv
Ecap_IPC_QA.csv 161.86 KB text/csv
Ecap_LOD_LOQ.csv 11.7 KB text/csv
Ecap_Sampling_Transect_ID.csv 652 Bytes text/csv
Ecap_Specificity.csv 966 Bytes text/csv

Purpose

Environmental DNA survey data for Epioblasma capsaeformis were collected to validate eDNA concentrations predicted by a one-dimensional hydraulic transport model that integrated high spatial and temporal resolution of system hydraulics with biological degradation of eDNA decay to simulate eDNA transport.

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Communities

  • Columbia Environmental Research Center (CERC)
  • USGS Data Release Products

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Additional Information

Identifiers

Type Scheme Key
DOI https://www.sciencebase.gov/vocab/category/item/identifier doi:10.5066/P9IBBTSE

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