Reduced representation sequencing and genotyping of Arizona Toads (Anaxyrus microscaphus) from the southwestern United States
Dates
Publication Date
2023-09-28
Start Date
2011
End Date
2021
Citation
Cornman, R.S., Fike, J., Oyler-McCance, S.J., and Muths, E.L., 2023, Reduced representation sequencing and genotyping of Arizona Toads (Anaxyrus microscaphus) from the southwestern United States: U.S. Geological Survey data release, https://doi.org/10.5066/P9621XL1.
Summary
The dataset consists of genotypes (diploid base calls at variant sites) at 3,601 anonymous sites of the Arizona Toad (Anaxyrus microscaphus) nuclear genome. The genotyped samples are representative of the range of the species and its major population units, and the genotyped loci have a high degree of completeness. This data release consists of several files: 1. sample.metadata.txt, which contains sampling metadata and identifiers linking to sequence data that has been deposited in the Sequence Read Archive of the National Center for Biotechnology Information (NCBI). This database is authoritative and comprehensive for sharing high-throughput sequence data produced with public funds. All NCBI-derived accessions listed in the file [...]
Summary
The dataset consists of genotypes (diploid base calls at variant sites) at 3,601 anonymous sites of the Arizona Toad (Anaxyrus microscaphus) nuclear genome. The genotyped samples are representative of the range of the species and its major population units, and the genotyped loci have a high degree of completeness.
This data release consists of several files:
1. sample.metadata.txt, which contains sampling metadata and identifiers linking to sequence data that has been deposited in the Sequence Read Archive of the National Center for Biotechnology Information (NCBI). This database is authoritative and comprehensive for sharing high-throughput sequence data produced with public funds. All NCBI-derived accessions listed in the file can be searched at www.ncbi.nlm.nih.gov to retrieve sample and sequence information, as can the umbrella BioProject accession PRJNA995169
2. genotypes.genepop.txt, which contains inferred genetic variants in a common and convertible text-based format
Click on title to download individual files attached to this item.
arizona.toad.popgen.xml Original FGDC Metadata
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26.27 KB
application/fgdc+xml
sample.metadata.txt
7.55 KB
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genotypes.genepop.txt
2.41 MB
text/plain
Purpose
Population genetic data provides information on species boundaries, distinct conservation units, and mechanisms of gene flow connecting discrete populations. These genetic data were collected to support conservation and management of the Arizona Toad (Anaxyrus microscaphus)
